Wall clock time and date at job start Mon Mar 30 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99703 * 2 1 4 4 H 1.48492 * 109.47169 * 270.00067 * 3 2 1 5 5 H 1.48502 * 109.47026 * 29.99944 * 3 2 1 6 6 H 1.48496 * 109.46662 * 149.99856 * 3 2 1 7 7 C 1.37878 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00514 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99279 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46592 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46780 * 180.02562 * 10 9 7 12 12 O 1.42903 * 110.42936 * 300.69890 * 11 10 9 13 13 C 1.54884 * 110.60201 * 63.31622 * 11 10 9 14 14 C 1.54891 * 102.75037 * 156.67771 * 13 11 10 15 15 C 1.54269 * 104.19339 * 322.05787 * 14 13 11 16 16 C 1.53880 * 106.59932 * 23.61222 * 15 14 13 17 17 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47318 * 59.99817 * 9 7 2 19 19 H 1.08999 * 109.47009 * 300.00062 * 9 7 2 20 20 H 1.08997 * 109.46939 * 59.99926 * 10 9 7 21 21 H 1.08994 * 109.47012 * 299.99774 * 10 9 7 22 22 H 0.96700 * 114.00311 * 57.46311 * 12 11 10 23 23 H 1.09001 * 110.75738 * 274.99492 * 13 11 10 24 24 H 1.08996 * 110.75739 * 38.36218 * 13 11 10 25 25 H 1.08996 * 110.48563 * 203.38344 * 14 13 11 26 26 H 1.09000 * 110.48327 * 80.73607 * 14 13 11 27 27 H 1.08999 * 110.03179 * 264.32926 * 15 14 13 28 28 H 1.08998 * 110.03159 * 142.89678 * 15 14 13 29 29 H 1.08997 * 110.02784 * 240.71715 * 16 15 14 30 30 H 1.08994 * 110.03400 * 119.28046 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5517 -2.6364 -0.0001 12 8 6.0514 -1.9512 -1.1503 13 6 6.0956 -1.9870 1.2965 14 6 7.5144 -2.5969 1.4152 15 6 7.3395 -4.0557 0.9448 16 6 6.0916 -4.0808 0.0448 17 1 -0.4850 0.8400 -0.0004 18 1 3.8746 -0.6807 0.8905 19 1 3.8752 -0.6795 -0.8894 20 1 3.6586 -3.1493 -0.8920 21 1 3.6580 -3.1513 0.8879 22 1 5.7434 -1.0379 -1.2288 23 1 6.1485 -0.9032 1.1930 24 1 5.4828 -2.2646 2.1541 25 1 7.8566 -2.5682 2.4497 26 1 8.2125 -2.0679 0.7665 27 1 7.1933 -4.7101 1.8041 28 1 8.2150 -4.3728 0.3781 29 1 5.3399 -4.7474 0.4674 30 1 6.3614 -4.4099 -0.9586 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260907185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:47 Heat of formation + Delta-G solvation = -101.873254 kcal Electronic energy + Delta-G solvation = -11547.580292 eV Core-core repulsion = 9533.632298 eV Total energy + Delta-G solvation = -2013.947995 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.23581 -35.83319 -35.28177 -33.20900 -29.81033 -29.17804 -25.91379 -22.80664 -21.25069 -20.72734 -19.05819 -17.28525 -16.61590 -16.17770 -16.05115 -15.34346 -14.85615 -14.53143 -13.76068 -13.43015 -13.12018 -12.97186 -12.54087 -12.34397 -12.08265 -11.95580 -11.86329 -11.65175 -11.45110 -11.26781 -11.01411 -10.77689 -10.53707 -8.30684 -6.35507 1.35690 1.37770 1.49236 2.35297 3.04459 3.34622 3.67810 3.77604 4.02105 4.34870 4.47454 4.51865 4.59441 4.77310 4.82205 4.91514 4.92188 5.08993 5.12642 5.15720 5.28287 5.36069 5.45203 5.52788 5.57397 5.66347 6.26757 6.72317 6.85961 7.28978 8.86400 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.063641 B = 0.010633 C = 0.009993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.859049 B = 2632.717663 C = 2801.296745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.010 4.010 10 C -0.119 4.119 11 C 0.124 3.876 12 O -0.569 6.569 13 C -0.149 4.149 14 C -0.116 4.116 15 C -0.118 4.118 16 C -0.115 4.115 17 H 0.266 0.734 18 H 0.027 0.973 19 H 0.021 0.979 20 H 0.043 0.957 21 H 0.059 0.941 22 H 0.381 0.619 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.720 -3.394 2.552 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.047 4.047 10 C -0.157 4.157 11 C 0.084 3.916 12 O -0.377 6.377 13 C -0.187 4.187 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.152 4.152 17 H 0.075 0.925 18 H 0.045 0.955 19 H 0.039 0.961 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.230 0.770 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.872 -3.879 2.457 16.523 hybrid contribution -0.937 1.183 -0.072 1.511 sum 14.935 -2.696 2.385 15.362 Atomic orbital electron populations 1.70085 1.08479 1.28220 1.52661 1.26113 0.95682 1.03822 0.94013 0.85592 0.79646 0.77725 0.79301 1.19048 1.21152 1.16356 1.21503 0.92342 0.92947 1.50487 0.95549 1.19510 0.93801 0.94764 0.96597 1.21998 0.94793 0.97973 1.00892 1.22174 0.91065 0.93168 0.85237 1.86389 1.74414 1.30586 1.46354 1.23139 0.97646 1.00222 0.97680 1.22303 0.95767 0.95671 1.01588 1.22115 0.97099 0.97122 0.99177 1.22201 0.98396 0.93753 1.00894 0.92509 0.95500 0.96127 0.93769 0.92242 0.76991 0.91649 0.90783 0.90265 0.91696 0.90479 0.90991 0.90311 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.00 0.00 5.47 84.65 0.46 0.47 16 3 Si 0.95 43.89 27.47 68.60 1.88 45.78 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 7 C -0.53 -31.29 9.66 25.60 0.25 -31.04 16 8 H 0.03 1.71 7.99 -2.92 -0.02 1.69 16 9 C -0.01 -0.44 3.55 29.85 0.11 -0.33 16 10 C -0.12 -4.73 4.31 30.60 0.13 -4.59 16 11 C 0.12 4.00 0.93 -9.72 -0.01 3.99 16 12 O -0.57 -18.92 13.03 -148.98 -1.94 -20.86 16 13 C -0.15 -4.25 5.09 31.88 0.16 -4.09 16 14 C -0.12 -2.65 6.81 31.67 0.22 -2.43 16 15 C -0.12 -2.58 6.80 31.32 0.21 -2.36 16 16 C -0.11 -3.14 6.12 31.32 0.19 -2.95 16 17 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 18 H 0.03 1.19 6.34 -2.39 -0.02 1.18 16 19 H 0.02 0.90 6.21 -2.39 -0.01 0.89 16 20 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.38 11.51 7.35 -74.06 -0.54 10.97 16 23 H 0.06 1.88 8.00 -2.39 -0.02 1.86 16 24 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 2.06 7.83 -2.39 -0.02 2.04 16 30 H 0.07 1.86 8.07 -2.39 -0.02 1.84 16 Total: -1.00 -66.30 240.95 2.47 -63.84 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.50 Total: 14.93 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 1.72 Total: -43.35 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.30 Total: -60.34 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -1.94 Total: -20.86 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Total: -66.30 2.47 -63.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260907185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.037 kcal (2) G-P(sol) polarization free energy of solvation -66.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds