Wall clock time and date at job start Mon Mar 30 2020 02:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48310 * 110.94288 * 2 1 4 4 C 1.54799 * 101.79957 * 148.37549 * 3 2 1 5 5 C 1.51813 * 102.22862 * 335.79462 * 4 3 2 6 6 O 1.21284 * 126.03971 * 194.84426 * 5 4 3 7 7 N 1.34589 * 107.92520 * 14.82487 * 5 4 3 8 8 C 1.46499 * 123.53006 * 181.59650 * 7 5 4 9 9 C 1.50701 * 109.46992 * 275.02182 * 8 7 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47094 * 90.00289 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00171 * 13 11 9 16 16 H 1.48493 * 109.47449 * 330.00136 * 13 11 9 17 17 H 1.09006 * 109.46478 * 300.22849 * 1 2 3 18 18 H 1.08995 * 109.47168 * 60.21967 * 1 2 3 19 19 H 1.08994 * 109.47452 * 180.22905 * 1 2 3 20 20 H 1.08993 * 111.16504 * 30.18020 * 3 2 1 21 21 H 1.09004 * 110.83649 * 266.42375 * 3 2 1 22 22 H 1.08993 * 110.85544 * 217.61031 * 4 3 2 23 23 H 1.09000 * 111.02761 * 94.05618 * 4 3 2 24 24 H 1.09002 * 109.47391 * 155.02172 * 8 7 5 25 25 H 1.09001 * 109.46813 * 35.02229 * 8 7 5 26 26 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3851 0.0000 4 6 3.3173 1.2196 0.7945 5 6 3.0398 -0.0222 1.6227 6 8 3.6800 -0.3980 2.5818 7 7 1.9576 -0.6322 1.1048 8 6 1.3699 -1.8512 1.6658 9 6 2.0936 -3.0550 1.1198 10 1 2.9099 -2.9251 0.4249 11 6 1.7141 -4.3223 1.5084 12 7 0.7203 -4.4805 2.3551 13 14 2.6116 -5.8145 0.8322 14 1 3.7512 -6.1521 1.7225 15 1 1.6769 -6.9666 0.7663 16 1 3.1202 -5.5112 -0.5295 17 1 -0.3632 0.5174 0.8880 18 1 -0.3633 0.5104 -0.8919 19 1 -0.3634 -1.0276 0.0041 20 1 1.3192 2.0667 0.5110 21 1 2.1971 1.7245 -1.0168 22 1 3.4944 2.0824 1.4365 23 1 4.1608 1.0578 0.1234 24 1 0.3161 -1.9057 1.3922 25 1 1.4628 -1.8328 2.7517 26 1 0.4531 -5.3722 2.6282 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260917851.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:49 Heat of formation + Delta-G solvation = 10.353602 kcal Electronic energy + Delta-G solvation = -11439.911729 eV Core-core repulsion = 9327.289913 eV Total energy + Delta-G solvation = -2112.621816 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.16997 -36.53534 -33.45546 -31.53649 -30.87118 -27.28662 -24.88632 -23.27828 -21.78372 -19.00637 -16.65985 -16.22515 -15.80416 -15.21693 -14.44257 -13.63523 -13.33545 -13.16980 -12.84785 -12.28282 -12.00334 -11.58752 -11.38696 -11.05437 -10.94687 -10.64050 -10.27729 -9.94081 -9.27421 -8.92769 -8.45298 -7.07400 -6.06150 -4.10529 3.28821 3.33500 3.38496 3.40192 3.51498 4.45375 4.67832 4.85294 5.05665 5.23420 5.28598 5.66425 5.70813 5.76446 6.01287 6.10534 6.23676 6.56655 7.02709 7.25861 7.72757 7.92596 8.16414 8.53659 8.87441 9.10219 9.54590 11.01433 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.051238 B = 0.012965 C = 0.011839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.342781 B = 2159.162007 C = 2364.509673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.287 5.287 3 C 0.017 3.983 4 C -0.163 4.163 5 C 0.502 3.498 6 O -0.533 6.533 7 N -0.454 5.454 8 C 0.255 3.745 9 C -0.520 4.520 10 H 0.063 0.937 11 C 0.059 3.941 12 N -0.899 5.899 13 Si 0.903 3.097 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 H 0.031 0.969 18 H 0.078 0.922 19 H 0.089 0.911 20 H 0.057 0.943 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 10.033 -5.489 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.103 5.103 3 C -0.111 4.111 4 C -0.204 4.204 5 C 0.287 3.713 6 O -0.409 6.409 7 N -0.275 5.275 8 C 0.137 3.863 9 C -0.559 4.559 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.538 5.538 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 H 0.050 0.950 18 H 0.096 0.904 19 H 0.107 0.893 20 H 0.075 0.925 21 H 0.119 0.881 22 H 0.113 0.887 23 H 0.123 0.877 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.335 9.335 -5.278 10.729 hybrid contribution -0.017 -0.370 0.236 0.439 sum -0.351 8.965 -5.042 10.292 Atomic orbital electron populations 1.23058 0.87939 1.04182 1.00698 1.65855 1.08200 1.11542 1.24727 1.23743 0.95396 0.90295 1.01697 1.22678 0.99058 0.98692 0.99940 1.20646 0.81202 0.85484 0.83995 1.90689 1.51980 1.70523 1.27677 1.48582 1.28572 1.25542 1.24813 1.19484 0.94250 0.78327 0.94220 1.21406 1.17386 0.90213 1.26907 0.91858 1.24945 0.95212 0.99067 0.95039 1.69926 1.27770 1.23094 1.33056 0.86405 0.79425 0.81642 0.79450 1.20502 1.21139 1.19747 0.95008 0.90351 0.89254 0.92507 0.88083 0.88705 0.87709 0.93933 0.93938 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.00 60.07 0.54 0.38 15 2 N -0.29 -5.29 5.81 -119.00 -0.69 -5.98 15 3 C 0.02 0.23 7.07 -2.10 -0.01 0.21 15 4 C -0.16 -2.51 7.11 -26.39 -0.19 -2.69 15 5 C 0.50 11.23 8.15 -10.52 -0.09 11.15 15 6 O -0.53 -14.12 17.70 5.55 0.10 -14.02 15 7 N -0.45 -10.34 3.03 -61.11 -0.19 -10.52 15 8 C 0.26 6.81 5.34 -5.19 -0.03 6.78 15 9 C -0.52 -15.18 9.38 -34.44 -0.32 -15.50 15 10 H 0.06 1.89 7.81 -52.49 -0.41 1.48 15 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 12 N -0.90 -26.71 13.29 55.43 0.74 -25.97 15 13 Si 0.90 22.25 29.54 -169.99 -5.02 17.22 15 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 15 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 17 H 0.03 0.48 8.10 -51.93 -0.42 0.06 15 18 H 0.08 0.97 8.14 -51.93 -0.42 0.54 15 19 H 0.09 1.61 6.47 -51.93 -0.34 1.27 15 20 H 0.06 0.69 7.86 -51.93 -0.41 0.28 15 21 H 0.10 1.10 8.14 -51.93 -0.42 0.67 15 22 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.10 1.47 8.14 -51.93 -0.42 1.04 15 24 H 0.04 1.12 5.90 -51.93 -0.31 0.81 15 25 H 0.04 1.25 8.04 -51.93 -0.42 0.83 15 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 227.26 15.07 3.42 3.42 Total: -1.00 -33.21 227.26 -4.96 -38.17 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -3.12 Total: -4.27 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.20 Total: 1.94 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.14 Total: -42.47 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.10 Total: -14.02 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -33.21 -4.96 -38.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260917851.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.524 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds