Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46667 * 110.99814 * 2 1 4 4 C 1.53409 * 108.95414 * 177.82175 * 3 2 1 5 5 C 1.53272 * 108.03094 * 294.39725 * 4 3 2 6 6 C 1.50489 * 109.15485 * 45.56145 * 5 4 3 7 7 O 1.21284 * 118.68633 * 163.87458 * 6 5 4 8 8 N 1.33485 * 122.62163 * 343.90500 * 6 5 4 9 9 C 1.37102 * 117.58954 * 182.73834 * 8 6 5 10 10 H 1.07996 * 120.00469 * 48.89887 * 9 8 6 11 11 C 1.38954 * 119.99327 * 228.89837 * 9 8 6 12 12 N 1.31413 * 119.99840 * 192.49555 * 11 9 8 13 13 Si 1.86794 * 120.00284 * 12.49808 * 11 9 8 14 14 H 1.48501 * 109.47517 * 85.17713 * 13 11 9 15 15 H 1.48504 * 109.47497 * 205.17879 * 13 11 9 16 16 H 1.48506 * 109.47329 * 325.17809 * 13 11 9 17 17 H 1.08998 * 109.47087 * 51.60671 * 1 2 3 18 18 H 1.08995 * 109.46939 * 171.60997 * 1 2 3 19 19 H 1.09006 * 109.46847 * 291.60624 * 1 2 3 20 20 H 1.08999 * 109.57916 * 297.70260 * 3 2 1 21 21 H 1.09007 * 109.57609 * 57.95203 * 3 2 1 22 22 H 1.09004 * 109.75500 * 53.89099 * 4 3 2 23 23 H 1.09000 * 109.75275 * 174.63376 * 4 3 2 24 24 H 1.08999 * 109.40816 * 285.70855 * 5 4 3 25 25 H 1.09001 * 109.64611 * 165.56113 * 5 4 3 26 26 H 0.96999 * 120.00205 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9946 1.3693 0.0000 4 6 3.5267 1.3149 0.0551 5 6 3.9319 0.7146 1.4060 6 6 3.0843 -0.4980 1.6815 7 8 3.4421 -1.2752 2.5411 8 7 1.9549 -0.7526 1.0172 9 6 1.2333 -1.8567 1.3913 10 1 1.0069 -2.0262 2.4336 11 6 0.7933 -2.7577 0.4293 12 7 -0.0957 -3.6729 0.7439 13 14 1.4655 -2.6680 -1.3112 14 1 2.7379 -3.4294 -1.3904 15 1 0.4787 -3.2536 -2.2539 16 1 1.7143 -1.2494 -1.6734 17 1 -0.3633 0.6382 -0.8054 18 1 -0.3633 -1.0166 -0.1499 19 1 -0.3633 0.3784 0.9555 20 1 1.6798 1.8814 -0.9092 21 1 1.6167 1.9055 0.8705 22 1 3.9024 0.6865 -0.7524 23 1 3.9347 2.3212 -0.0401 24 1 3.7770 1.4539 2.1919 25 1 4.9827 0.4264 1.3786 26 1 -0.4026 -4.3020 0.0725 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260929107.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = 22.253234 kcal Electronic energy + Delta-G solvation = -11987.501570 eV Core-core repulsion = 9875.395761 eV Total energy + Delta-G solvation = -2112.105810 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.85789 -36.34986 -34.06081 -31.93055 -30.80045 -26.64920 -25.68691 -22.90360 -21.90772 -18.61701 -17.37742 -16.01481 -15.59763 -14.99893 -14.08390 -13.72989 -13.38789 -13.07414 -12.63506 -12.36108 -11.99019 -11.63266 -11.21414 -10.76118 -10.68791 -10.48609 -10.26816 -9.90095 -9.38486 -8.59646 -8.25853 -6.63416 -6.30825 -4.13516 3.35461 3.41433 3.64448 3.75631 4.04265 4.44354 4.83252 5.13473 5.21201 5.38831 5.59866 5.81209 5.88941 6.02963 6.09863 6.20445 6.30053 6.47434 6.67120 6.86057 7.21290 7.76732 8.41758 8.83267 9.03639 9.53624 9.94394 10.76447 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.043738 B = 0.021581 C = 0.018519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.024318 B = 1297.100559 C = 1511.637795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.316 5.316 3 C 0.022 3.978 4 C -0.119 4.119 5 C -0.135 4.135 6 C 0.470 3.530 7 O -0.569 6.569 8 N -0.315 5.315 9 C -0.335 4.335 10 H 0.097 0.903 11 C 0.078 3.922 12 N -0.868 5.868 13 Si 0.869 3.131 14 H -0.285 1.285 15 H -0.296 1.296 16 H -0.203 1.203 17 H 0.060 0.940 18 H 0.093 0.907 19 H 0.032 0.968 20 H 0.084 0.916 21 H 0.035 0.965 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 10.372 -5.235 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.132 5.132 3 C -0.106 4.106 4 C -0.157 4.157 5 C -0.176 4.176 6 C 0.256 3.744 7 O -0.448 6.448 8 N -0.124 5.124 9 C -0.463 4.463 10 H 0.114 0.886 11 C -0.131 4.131 12 N -0.503 5.503 13 Si 0.693 3.307 14 H -0.211 1.211 15 H -0.222 1.222 16 H -0.124 1.124 17 H 0.078 0.922 18 H 0.111 0.889 19 H 0.050 0.950 20 H 0.103 0.897 21 H 0.053 0.947 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.842 9.644 -5.246 11.340 hybrid contribution -0.172 0.312 -0.144 0.385 sum 2.670 9.956 -5.391 11.632 Atomic orbital electron populations 1.22682 0.87342 1.04160 0.99497 1.64554 1.08119 1.08667 1.31906 1.22640 0.95801 0.90973 1.01163 1.21704 0.95207 1.01000 0.97771 1.21746 1.00793 0.96995 0.98038 1.19842 0.81892 0.88258 0.84358 1.90595 1.70829 1.49461 1.33927 1.42861 1.19107 1.20850 1.29625 1.18888 1.33218 0.98500 0.95720 0.88584 1.25517 0.93905 0.93568 1.00084 1.69743 1.26914 1.17660 1.35986 0.87079 0.78585 0.82423 0.82595 1.21097 1.22247 1.12448 0.92164 0.88863 0.94968 0.89750 0.94668 0.90609 0.91077 0.90009 0.89170 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.19 60.07 0.49 0.71 15 2 N -0.32 -6.74 2.28 -121.06 -0.28 -7.02 15 3 C 0.02 0.37 5.59 -3.74 -0.02 0.35 15 4 C -0.12 -1.80 6.27 -26.38 -0.17 -1.96 15 5 C -0.14 -2.41 6.16 -27.84 -0.17 -2.58 15 6 C 0.47 11.61 7.43 -11.66 -0.09 11.52 15 7 O -0.57 -16.50 16.71 5.55 0.09 -16.41 15 8 N -0.32 -7.97 2.50 -11.32 -0.03 -8.00 15 9 C -0.33 -9.75 7.68 -14.93 -0.11 -9.86 15 10 H 0.10 3.15 8.02 -52.49 -0.42 2.73 15 11 C 0.08 2.20 3.92 -17.47 -0.07 2.13 15 12 N -0.87 -25.53 13.96 55.50 0.77 -24.76 15 13 Si 0.87 21.26 26.15 -169.99 -4.44 16.81 15 14 H -0.28 -7.33 7.11 56.52 0.40 -6.92 15 15 H -0.30 -7.09 7.11 56.52 0.40 -6.68 15 16 H -0.20 -4.56 5.39 56.52 0.30 -4.26 15 17 H 0.06 0.98 8.10 -51.93 -0.42 0.56 15 18 H 0.09 2.14 4.63 -51.93 -0.24 1.90 15 19 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.07 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 LS Contribution 212.48 15.07 3.20 3.20 Total: -1.00 -33.09 212.48 -4.09 -37.18 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -3.27 Total: -1.31 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.14 Total: 0.30 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.47 Total: -39.78 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.09 Total: -16.41 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.44 Total: 16.81 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -33.09 -4.09 -37.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929107.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.431 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds