Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46667 * 110.99814 * 2 1 4 4 C 1.53409 * 108.95414 * 177.82175 * 3 2 1 5 5 C 1.53272 * 108.03094 * 294.39725 * 4 3 2 6 6 C 1.50489 * 109.15485 * 45.56145 * 5 4 3 7 7 O 1.21284 * 118.68633 * 163.87458 * 6 5 4 8 8 N 1.33485 * 122.62163 * 343.90500 * 6 5 4 9 9 C 1.37102 * 117.58954 * 182.73834 * 8 6 5 10 10 H 1.07996 * 120.00469 * 48.89887 * 9 8 6 11 11 C 1.38954 * 119.99327 * 228.89837 * 9 8 6 12 12 N 1.31413 * 119.99840 * 192.49555 * 11 9 8 13 13 Si 1.86794 * 120.00284 * 12.49808 * 11 9 8 14 14 H 1.48501 * 109.47517 * 85.17713 * 13 11 9 15 15 H 1.48504 * 109.47497 * 205.17879 * 13 11 9 16 16 H 1.48506 * 109.47329 * 325.17809 * 13 11 9 17 17 H 1.08998 * 109.47087 * 51.60671 * 1 2 3 18 18 H 1.08995 * 109.46939 * 171.60997 * 1 2 3 19 19 H 1.09006 * 109.46847 * 291.60624 * 1 2 3 20 20 H 1.08999 * 109.57916 * 297.70260 * 3 2 1 21 21 H 1.09007 * 109.57609 * 57.95203 * 3 2 1 22 22 H 1.09004 * 109.75500 * 53.89099 * 4 3 2 23 23 H 1.09000 * 109.75275 * 174.63376 * 4 3 2 24 24 H 1.08999 * 109.40816 * 285.70855 * 5 4 3 25 25 H 1.09001 * 109.64611 * 165.56113 * 5 4 3 26 26 H 0.96999 * 120.00205 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9946 1.3693 0.0000 4 6 3.5267 1.3149 0.0551 5 6 3.9319 0.7146 1.4060 6 6 3.0843 -0.4980 1.6815 7 8 3.4421 -1.2752 2.5411 8 7 1.9549 -0.7526 1.0172 9 6 1.2333 -1.8567 1.3913 10 1 1.0069 -2.0262 2.4336 11 6 0.7933 -2.7577 0.4293 12 7 -0.0957 -3.6729 0.7439 13 14 1.4655 -2.6680 -1.3112 14 1 2.7379 -3.4294 -1.3904 15 1 0.4787 -3.2536 -2.2539 16 1 1.7143 -1.2494 -1.6734 17 1 -0.3633 0.6382 -0.8054 18 1 -0.3633 -1.0166 -0.1499 19 1 -0.3633 0.3784 0.9555 20 1 1.6798 1.8814 -0.9092 21 1 1.6167 1.9055 0.8705 22 1 3.9024 0.6865 -0.7524 23 1 3.9347 2.3212 -0.0401 24 1 3.7770 1.4539 2.1919 25 1 4.9827 0.4264 1.3786 26 1 -0.4026 -4.3020 0.0725 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260929107.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = -2.498222 kcal Electronic energy + Delta-G solvation = -11988.574874 eV Core-core repulsion = 9875.395761 eV Total energy + Delta-G solvation = -2113.179113 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.63342 -38.25433 -35.72633 -33.85907 -32.63228 -28.13964 -27.62420 -24.61899 -23.47618 -20.47563 -19.12933 -17.90035 -17.44722 -16.67303 -15.88976 -15.33951 -15.01344 -14.78491 -14.60932 -14.00892 -13.78799 -13.13111 -12.95674 -12.59375 -12.20963 -11.93451 -11.83154 -11.77673 -11.32448 -10.58654 -10.26723 -8.54931 -8.42311 -6.37348 1.40670 1.42617 1.70457 1.90645 2.27992 2.39801 2.90031 3.53142 3.95166 4.06389 4.17526 4.54359 4.56415 4.64500 4.72851 4.94758 4.97383 5.13598 5.19105 5.32233 5.58190 5.71636 6.14019 6.78269 6.93039 7.52362 8.03941 8.63450 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.043738 B = 0.021581 C = 0.018519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.024318 B = 1297.100559 C = 1511.637795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.326 5.326 3 C 0.016 3.984 4 C -0.111 4.111 5 C -0.125 4.125 6 C 0.449 3.551 7 O -0.632 6.632 8 N -0.320 5.320 9 C -0.350 4.350 10 H 0.033 0.967 11 C 0.038 3.962 12 N -0.912 5.912 13 Si 0.931 3.069 14 H -0.304 1.304 15 H -0.285 1.285 16 H -0.162 1.162 17 H 0.112 0.888 18 H 0.059 0.941 19 H 0.019 0.981 20 H 0.129 0.871 21 H 0.041 0.959 22 H 0.073 0.927 23 H 0.124 0.876 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.564 13.449 -7.979 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.143 5.143 3 C -0.111 4.111 4 C -0.149 4.149 5 C -0.165 4.165 6 C 0.238 3.762 7 O -0.515 6.515 8 N -0.128 5.128 9 C -0.479 4.479 10 H 0.051 0.949 11 C -0.167 4.167 12 N -0.548 5.548 13 Si 0.753 3.247 14 H -0.231 1.231 15 H -0.211 1.211 16 H -0.082 1.082 17 H 0.130 0.870 18 H 0.078 0.922 19 H 0.037 0.963 20 H 0.147 0.853 21 H 0.059 0.941 22 H 0.092 0.908 23 H 0.142 0.858 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.777 12.758 -7.995 15.522 hybrid contribution -0.500 -0.601 0.806 1.123 sum 3.277 12.157 -7.189 14.498 Atomic orbital electron populations 1.22690 0.86682 1.03186 1.00777 1.64163 1.08684 1.11805 1.29674 1.22943 0.96762 0.87726 1.03638 1.21787 0.94141 1.03629 0.95300 1.21771 0.99838 0.93942 1.00929 1.21299 0.82038 0.89837 0.83039 1.90550 1.72189 1.52180 1.36609 1.42900 1.19081 1.20768 1.30004 1.18425 1.34435 1.01662 0.93370 0.94866 1.26267 0.93475 0.92594 1.04315 1.69837 1.28402 1.18824 1.37772 0.86199 0.76785 0.84366 0.77360 1.23144 1.21136 1.08220 0.87023 0.92227 0.96260 0.85311 0.94074 0.90824 0.85774 0.87715 0.87703 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.54 8.19 127.69 1.05 1.58 15 2 N -0.33 -12.89 2.28 -536.94 -1.23 -14.11 15 3 C 0.02 0.44 5.59 86.48 0.48 0.92 15 4 C -0.11 -2.68 6.27 30.82 0.19 -2.48 15 5 C -0.12 -4.01 6.16 29.87 0.18 -3.83 15 6 C 0.45 22.14 7.43 87.79 0.65 22.79 15 7 O -0.63 -38.15 16.71 -3.04 -0.05 -38.20 15 8 N -0.32 -16.14 2.50 -308.82 -0.77 -16.92 15 9 C -0.35 -21.36 7.68 84.04 0.65 -20.72 15 10 H 0.03 2.39 8.02 -2.91 -0.02 2.37 15 11 C 0.04 2.20 3.92 84.93 0.33 2.53 15 12 N -0.91 -55.90 13.96 21.66 0.30 -55.60 15 13 Si 0.93 43.66 26.15 68.60 1.79 45.45 15 14 H -0.30 -15.16 7.11 99.48 0.71 -14.45 15 15 H -0.29 -12.77 7.11 99.48 0.71 -12.06 15 16 H -0.16 -6.49 5.39 99.48 0.54 -5.96 15 17 H 0.11 3.06 8.10 -2.39 -0.02 3.05 15 18 H 0.06 2.69 4.63 -2.39 -0.01 2.68 15 19 H 0.02 0.76 8.14 -2.38 -0.02 0.74 15 20 H 0.13 2.49 8.14 -2.39 -0.02 2.47 15 21 H 0.04 1.12 8.14 -2.38 -0.02 1.10 15 22 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.10 2.92 8.14 -2.39 -0.02 2.90 15 25 H 0.10 3.08 8.14 -2.39 -0.02 3.06 15 26 H 0.28 15.80 8.31 -92.71 -0.77 15.03 15 Total: -1.00 -78.58 212.48 4.57 -74.01 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.99 Total: 4.57 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 3.54 Total: 0.80 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -1.70 Total: -86.63 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.05 Total: -38.20 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.79 Total: 45.45 kcal Total: -78.58 4.57 -74.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929107.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.509 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds