Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34224 * 117.00147 * 2 1 4 4 O 1.20830 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00071 * 180.02562 * 3 2 1 6 6 C 1.50701 * 112.84636 * 299.89092 * 5 3 2 7 7 H 1.07996 * 119.99856 * 114.83361 * 6 5 3 8 8 C 1.37878 * 120.00394 * 294.83806 * 6 5 3 9 9 N 1.31519 * 119.99622 * 357.48448 * 8 6 5 10 10 Si 1.86798 * 120.00593 * 177.48789 * 8 6 5 11 11 H 1.48498 * 109.47505 * 179.97438 * 10 8 6 12 12 H 1.48505 * 109.46817 * 300.00140 * 10 8 6 13 13 H 1.48505 * 109.46832 * 59.99364 * 10 8 6 14 14 C 1.53771 * 113.61827 * 71.08829 * 5 3 2 15 15 C 1.53957 * 87.02007 * 89.23206 * 14 5 3 16 16 C 1.53779 * 113.61630 * 168.70121 * 5 3 2 17 17 H 1.08997 * 109.47068 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.46833 * 300.00458 * 1 2 3 19 19 H 1.08998 * 109.46696 * 60.00492 * 1 2 3 20 20 H 0.96999 * 119.99874 * 355.52125 * 9 8 6 21 21 H 1.09001 * 113.61776 * 203.75251 * 14 5 3 22 22 H 1.09006 * 113.61621 * 334.65377 * 14 5 3 23 23 H 1.09003 * 113.53596 * 270.81046 * 15 14 5 24 24 H 1.09004 * 113.74396 * 139.94692 * 15 14 5 25 25 H 1.09004 * 113.61471 * 25.33966 * 16 5 3 26 26 H 1.08997 * 113.61711 * 156.16391 * 16 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.1874 0.6140 1.2031 7 1 4.8057 -0.2627 1.0788 8 6 3.9662 1.1286 2.4630 9 7 3.2541 2.2245 2.6099 10 14 4.6778 0.2694 3.9612 11 1 4.2995 1.0172 5.1870 12 1 4.1425 -1.1136 4.0394 13 1 6.1578 0.2215 3.8479 14 6 4.2050 0.8513 -1.3338 15 6 4.0767 2.3221 -1.7701 16 6 4.1092 2.6869 -0.2766 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 2.9394 2.7067 1.8292 21 1 5.2366 0.5132 -1.2359 22 1 3.5877 0.1668 -1.9157 23 1 3.1278 2.5511 -2.2551 24 1 4.9372 2.6909 -2.3285 25 1 3.4146 3.4822 -0.0062 26 1 5.1140 2.8521 0.1121 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942611.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -97.458552 kcal Electronic energy + Delta-G solvation = -11762.376559 eV Core-core repulsion = 9612.786906 eV Total energy + Delta-G solvation = -2149.589653 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.74648 -39.10543 -37.08070 -34.57446 -29.46426 -27.94614 -26.41281 -25.25369 -22.87955 -20.24488 -19.54403 -18.06101 -17.21092 -17.10220 -15.81189 -15.61606 -15.15115 -14.69902 -14.03806 -13.86193 -13.29360 -12.99581 -12.69130 -12.32812 -12.26390 -11.95965 -11.85278 -11.70303 -11.24048 -11.05634 -10.61198 -10.38620 -8.61657 -6.41772 1.42253 1.55424 1.63622 1.81522 2.05293 2.57750 3.15059 3.85314 3.91058 4.00967 4.23926 4.25485 4.29097 4.45690 4.63301 4.76915 4.96408 5.01570 5.12801 5.35008 5.47304 5.60864 5.91256 6.14385 6.53450 7.01407 7.39962 8.75445 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.035841 B = 0.019436 C = 0.015449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.031007 B = 1440.263432 C = 1812.036617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.487 3.513 4 O -0.562 6.562 5 C 0.010 3.990 6 C -0.591 4.591 7 H 0.067 0.933 8 C -0.027 4.027 9 N -0.935 5.935 10 Si 1.113 2.887 11 H -0.290 1.290 12 H -0.271 1.271 13 H -0.261 1.261 14 C -0.104 4.104 15 C -0.131 4.131 16 C -0.115 4.115 17 H 0.135 0.865 18 H 0.041 0.959 19 H 0.064 0.936 20 H 0.269 0.731 21 H 0.098 0.902 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.035 0.965 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -4.684 -5.820 7.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.334 3.666 4 O -0.453 6.453 5 C 0.009 3.991 6 C -0.628 4.628 7 H 0.085 0.915 8 C -0.227 4.227 9 N -0.572 5.572 10 Si 0.934 3.066 11 H -0.216 1.216 12 H -0.196 1.196 13 H -0.186 1.186 14 C -0.141 4.141 15 C -0.168 4.168 16 C -0.153 4.153 17 H 0.153 0.847 18 H 0.060 0.940 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.117 0.883 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.054 0.946 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.069 -4.356 -4.196 6.049 hybrid contribution -0.710 0.383 -1.381 1.599 sum -0.779 -3.973 -5.577 6.892 Atomic orbital electron populations 1.23453 0.76421 1.05312 1.01555 1.86539 1.23863 1.33780 1.83852 1.24819 0.93028 0.80239 0.68553 1.90469 1.68273 1.37620 1.48955 1.19568 0.83820 0.97574 0.98185 1.21977 1.33529 1.15386 0.91931 0.91484 1.27365 0.94590 0.96149 1.04615 1.70817 1.34055 1.17234 1.35074 0.83000 0.76758 0.74921 0.71888 1.21597 1.19601 1.18573 1.22836 1.01534 0.96296 0.93442 1.22899 1.02106 0.96461 0.95362 1.22828 0.99996 0.95737 0.96719 0.84700 0.93984 0.91761 0.91935 0.88339 0.91537 0.91396 0.88686 0.94626 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.56 113.37 1.20 2.11 15 2 O -0.36 -16.97 10.56 -51.36 -0.54 -17.51 15 3 C 0.49 25.25 5.69 71.24 0.41 25.65 15 4 O -0.56 -31.04 14.93 21.95 0.33 -30.71 15 5 C 0.01 0.50 0.65 -53.15 -0.03 0.47 15 6 C -0.59 -32.22 8.31 25.60 0.21 -32.00 15 7 H 0.07 3.51 7.81 -2.91 -0.02 3.49 15 8 C -0.03 -1.53 5.31 84.65 0.45 -1.08 15 9 N -0.94 -58.09 13.36 21.45 0.29 -57.80 15 10 Si 1.11 49.35 29.90 68.60 2.05 51.40 15 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 15 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 13 H -0.26 -10.48 7.11 99.48 0.71 -9.77 15 14 C -0.10 -4.11 7.22 31.18 0.23 -3.88 15 15 C -0.13 -4.89 7.81 31.18 0.24 -4.64 15 16 C -0.11 -5.41 5.89 31.12 0.18 -5.23 15 17 H 0.13 3.45 8.14 -2.39 -0.02 3.43 15 18 H 0.04 1.58 8.13 -2.39 -0.02 1.56 15 19 H 0.06 2.07 8.13 -2.39 -0.02 2.06 15 20 H 0.27 17.13 4.68 -92.71 -0.43 16.70 15 21 H 0.10 3.62 8.09 -2.39 -0.02 3.60 15 22 H 0.07 2.44 8.09 -2.38 -0.02 2.42 15 23 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 24 H 0.09 2.87 8.14 -2.39 -0.02 2.85 15 25 H 0.03 1.84 6.70 -2.38 -0.02 1.82 15 26 H 0.08 3.66 8.09 -2.39 -0.02 3.64 15 Total: -1.00 -68.40 225.70 6.50 -61.90 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.49 Total: 11.34 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 2.88 Total: -18.61 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.29 Total: -57.80 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.21 Total: -48.22 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.40 kcal Total: -68.40 6.50 -61.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942611.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.559 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds