Wall clock time and date at job start Mon Mar 30 2020 02:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46813 * 2 1 4 4 H 1.09003 * 110.84029 * 57.28641 * 3 2 1 5 5 C 1.54797 * 110.97648 * 181.03794 * 3 2 1 6 6 C 1.51820 * 102.28997 * 141.94675 * 5 3 2 7 7 O 1.21295 * 126.05422 * 165.40218 * 6 5 3 8 8 N 1.34602 * 107.91057 * 345.54903 * 6 5 3 9 9 C 1.37101 * 123.52394 * 178.26051 * 8 6 5 10 10 H 1.07995 * 120.00086 * 337.43893 * 9 8 6 11 11 C 1.38953 * 119.99712 * 157.44217 * 9 8 6 12 12 N 1.31404 * 119.99602 * 150.78075 * 11 9 8 13 13 Si 1.86800 * 120.00085 * 330.77727 * 11 9 8 14 14 H 1.48504 * 109.46997 * 271.51207 * 13 11 9 15 15 H 1.48506 * 109.47010 * 31.50888 * 13 11 9 16 16 H 1.48493 * 109.47106 * 151.51028 * 13 11 9 17 17 N 1.36334 * 112.94414 * 357.99620 * 8 6 5 18 18 H 1.08997 * 109.47284 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46912 * 300.00224 * 1 2 3 20 20 H 1.09007 * 109.46862 * 59.99919 * 1 2 3 21 21 H 1.08998 * 109.46805 * 240.00322 * 2 1 3 22 22 H 1.08998 * 109.46925 * 119.99847 * 2 1 3 23 23 H 1.09002 * 110.85053 * 260.34634 * 5 3 2 24 24 H 1.08997 * 110.85106 * 23.97240 * 5 3 2 25 25 H 0.97007 * 119.99655 * 179.97438 * 12 11 9 26 26 H 1.00903 * 110.99789 * 140.59868 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6502 1.9917 0.8571 5 6 3.5872 1.4834 -0.0262 6 6 3.8639 2.6651 -0.9383 7 8 4.9264 3.2365 -1.0638 8 7 2.7208 2.9687 -1.5808 9 6 2.6015 4.0125 -2.4616 10 1 3.2906 4.8425 -2.4118 11 6 1.5939 4.0024 -3.4184 12 7 1.0942 5.1353 -3.8583 13 14 0.9498 2.3783 -4.0794 14 1 1.7660 1.9606 -5.2476 15 1 1.0373 1.3426 -3.0187 16 1 -0.4659 2.5405 -4.4973 17 7 1.6955 2.1261 -1.2682 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 3.9877 1.6583 0.9724 24 1 3.9924 0.5657 -0.4526 25 1 0.3911 5.1283 -4.5265 26 1 0.8261 2.6309 -1.1823 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260943404.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:29 Heat of formation + Delta-G solvation = 5.592565 kcal Electronic energy + Delta-G solvation = -11586.235715 eV Core-core repulsion = 9473.407444 eV Total energy + Delta-G solvation = -2112.828270 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.90571 -36.02459 -34.29240 -32.36580 -29.99542 -28.38136 -25.22132 -23.23846 -20.57830 -19.21470 -17.96737 -16.24262 -15.51073 -14.79957 -14.17805 -13.73943 -13.43131 -12.92382 -12.66617 -12.49897 -12.38940 -11.82413 -11.27966 -11.01287 -10.79053 -10.73988 -10.59284 -10.24076 -9.53513 -8.75312 -8.35834 -7.10775 -6.50853 -3.96624 3.25084 3.34615 3.57104 3.69864 4.03485 4.34347 4.90966 4.98647 5.09101 5.23558 5.51610 5.55454 5.58564 5.77166 6.02944 6.07002 6.21210 6.30985 6.47088 6.52178 7.09979 7.58613 8.12169 8.62477 8.85118 9.36347 9.83776 10.58988 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.033985 B = 0.020964 C = 0.014408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.697277 B = 1335.312299 C = 1942.894975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C 0.042 3.958 4 H 0.060 0.940 5 C -0.150 4.150 6 C 0.450 3.550 7 O -0.570 6.570 8 N -0.310 5.310 9 C -0.336 4.336 10 H 0.113 0.887 11 C 0.066 3.934 12 N -0.849 5.849 13 Si 0.849 3.151 14 H -0.283 1.283 15 H -0.190 1.190 16 H -0.294 1.294 17 N -0.434 5.434 18 H 0.051 0.949 19 H 0.049 0.951 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.276 0.724 26 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 -10.171 6.755 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.067 4.067 4 H 0.078 0.922 5 C -0.191 4.191 6 C 0.237 3.763 7 O -0.451 6.451 8 N -0.118 5.118 9 C -0.463 4.463 10 H 0.130 0.870 11 C -0.143 4.143 12 N -0.483 5.483 13 Si 0.674 3.326 14 H -0.210 1.210 15 H -0.112 1.112 16 H -0.221 1.221 17 N -0.160 5.160 18 H 0.070 0.930 19 H 0.068 0.932 20 H 0.081 0.919 21 H 0.090 0.910 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.435 -10.208 6.094 12.375 hybrid contribution -0.730 0.132 0.062 0.744 sum -4.165 -10.076 6.155 12.520 Atomic orbital electron populations 1.21768 0.95897 1.01327 1.02063 1.21385 0.95951 0.94349 1.02112 1.23049 0.94981 0.96526 0.92171 0.92233 1.22585 0.95294 1.00124 1.01080 1.20220 0.83839 0.86394 0.85874 1.90573 1.26183 1.58352 1.70029 1.43476 1.04520 1.26298 1.37542 1.19115 1.18335 0.97419 1.11389 0.86962 1.25247 0.95292 0.98090 0.95663 1.69895 1.23395 1.27178 1.27816 0.87306 0.76658 0.87103 0.81573 1.20969 1.11235 1.22109 1.65061 0.99817 1.22838 1.28310 0.92996 0.93167 0.91926 0.90955 0.91598 0.89631 0.88613 0.91394 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.82 37.16 0.37 -1.46 15 2 C -0.10 -1.29 5.63 -26.73 -0.15 -1.44 15 3 C 0.04 0.68 3.58 -66.09 -0.24 0.45 15 4 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 5 C -0.15 -2.68 6.66 -26.38 -0.18 -2.85 15 6 C 0.45 11.10 8.11 -10.51 -0.09 11.02 15 7 O -0.57 -16.27 17.71 5.54 0.10 -16.17 15 8 N -0.31 -7.76 3.13 -10.64 -0.03 -7.79 15 9 C -0.34 -9.64 10.00 -14.93 -0.15 -9.79 15 10 H 0.11 3.59 8.03 -52.49 -0.42 3.17 15 11 C 0.07 1.82 5.26 -17.47 -0.09 1.73 15 12 N -0.85 -24.28 13.96 55.50 0.77 -23.51 15 13 Si 0.85 19.78 27.24 -169.99 -4.63 15.15 15 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 15 H -0.19 -4.04 5.23 56.52 0.30 -3.75 15 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 17 N -0.43 -8.87 3.31 -3.17 -0.01 -8.88 15 18 H 0.05 0.53 8.14 -51.93 -0.42 0.11 15 19 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 20 H 0.06 0.84 7.87 -51.92 -0.41 0.43 15 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.07 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.09 1.35 8.14 -51.93 -0.42 0.92 15 24 H 0.10 1.56 7.91 -51.93 -0.41 1.15 15 25 H 0.28 7.31 8.31 -40.82 -0.34 6.97 15 26 H 0.33 6.65 8.04 -181.55 -1.46 5.19 15 LS Contribution 222.85 15.07 3.36 3.36 Total: -1.00 -32.01 222.85 -5.44 -37.45 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.48 Total: 2.73 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.52 Total: -2.35 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.73 Total: -40.17 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.10 Total: -16.17 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.63 Total: 15.15 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -32.01 -5.44 -37.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260943404.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.047 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds