Wall clock time and date at job start Mon Mar 30 2020 02:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46813 * 2 1 4 4 H 1.09003 * 110.84029 * 57.28641 * 3 2 1 5 5 C 1.54797 * 110.97648 * 181.03794 * 3 2 1 6 6 C 1.51820 * 102.28997 * 141.94675 * 5 3 2 7 7 O 1.21295 * 126.05422 * 165.40218 * 6 5 3 8 8 N 1.34602 * 107.91057 * 345.54903 * 6 5 3 9 9 C 1.37101 * 123.52394 * 178.26051 * 8 6 5 10 10 H 1.07995 * 120.00086 * 337.43893 * 9 8 6 11 11 C 1.38953 * 119.99712 * 157.44217 * 9 8 6 12 12 N 1.31404 * 119.99602 * 150.78075 * 11 9 8 13 13 Si 1.86800 * 120.00085 * 330.77727 * 11 9 8 14 14 H 1.48504 * 109.46997 * 271.51207 * 13 11 9 15 15 H 1.48506 * 109.47010 * 31.50888 * 13 11 9 16 16 H 1.48493 * 109.47106 * 151.51028 * 13 11 9 17 17 N 1.36334 * 112.94414 * 357.99620 * 8 6 5 18 18 H 1.08997 * 109.47284 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46912 * 300.00224 * 1 2 3 20 20 H 1.09007 * 109.46862 * 59.99919 * 1 2 3 21 21 H 1.08998 * 109.46805 * 240.00322 * 2 1 3 22 22 H 1.08998 * 109.46925 * 119.99847 * 2 1 3 23 23 H 1.09002 * 110.85053 * 260.34634 * 5 3 2 24 24 H 1.08997 * 110.85106 * 23.97240 * 5 3 2 25 25 H 0.97007 * 119.99655 * 179.97438 * 12 11 9 26 26 H 1.00903 * 110.99789 * 140.59868 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6502 1.9917 0.8571 5 6 3.5872 1.4834 -0.0262 6 6 3.8639 2.6651 -0.9383 7 8 4.9264 3.2365 -1.0638 8 7 2.7208 2.9687 -1.5808 9 6 2.6015 4.0125 -2.4616 10 1 3.2906 4.8425 -2.4118 11 6 1.5939 4.0024 -3.4184 12 7 1.0942 5.1353 -3.8583 13 14 0.9498 2.3783 -4.0794 14 1 1.7660 1.9606 -5.2476 15 1 1.0373 1.3426 -3.0187 16 1 -0.4659 2.5405 -4.4973 17 7 1.6955 2.1261 -1.2682 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 3.9877 1.6583 0.9724 24 1 3.9924 0.5657 -0.4526 25 1 0.3911 5.1283 -4.5265 26 1 0.8261 2.6309 -1.1823 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260943404.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:29 Heat of formation + Delta-G solvation = -17.735972 kcal Electronic energy + Delta-G solvation = -11587.247316 eV Core-core repulsion = 9473.407444 eV Total energy + Delta-G solvation = -2113.839872 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.64493 -37.91604 -35.91039 -34.22563 -31.44795 -30.09356 -27.05756 -24.58211 -21.92587 -21.02985 -19.86726 -17.92034 -17.30149 -16.67098 -15.90764 -15.27678 -14.99308 -14.55302 -14.25584 -14.07963 -13.86037 -13.48362 -12.80586 -12.75856 -12.37892 -12.11012 -11.75038 -11.62912 -11.44238 -10.69524 -10.34720 -8.92555 -8.63450 -6.16035 1.35682 1.44586 1.71057 1.83743 2.26232 2.37078 2.98717 3.50556 3.69777 3.88195 4.22013 4.34438 4.56289 4.71495 4.84981 4.98145 5.12011 5.21781 5.29657 5.52241 5.53100 5.58844 6.02106 6.55985 6.85055 7.33787 7.87059 8.50613 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.033985 B = 0.020964 C = 0.014408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.697277 B = 1335.312299 C = 1942.894975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C 0.047 3.953 4 H 0.078 0.922 5 C -0.133 4.133 6 C 0.427 3.573 7 O -0.625 6.625 8 N -0.319 5.319 9 C -0.364 4.364 10 H 0.054 0.946 11 C 0.028 3.972 12 N -0.890 5.890 13 Si 0.923 3.077 14 H -0.299 1.299 15 H -0.154 1.154 16 H -0.284 1.284 17 N -0.436 5.436 18 H 0.070 0.930 19 H 0.060 0.940 20 H 0.045 0.955 21 H 0.067 0.933 22 H 0.099 0.901 23 H 0.113 0.887 24 H 0.119 0.881 25 H 0.284 0.716 26 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.542 -13.386 8.059 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.131 4.131 3 C -0.062 4.062 4 H 0.096 0.904 5 C -0.173 4.173 6 C 0.216 3.784 7 O -0.511 6.511 8 N -0.126 5.126 9 C -0.491 4.491 10 H 0.072 0.928 11 C -0.178 4.178 12 N -0.525 5.525 13 Si 0.745 3.255 14 H -0.227 1.227 15 H -0.075 1.075 16 H -0.210 1.210 17 N -0.163 5.163 18 H 0.089 0.911 19 H 0.079 0.921 20 H 0.064 0.936 21 H 0.086 0.914 22 H 0.118 0.882 23 H 0.131 0.869 24 H 0.137 0.863 25 H 0.094 0.906 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.971 -13.426 7.421 16.126 hybrid contribution -0.223 1.206 -0.295 1.262 sum -5.194 -12.220 7.126 15.070 Atomic orbital electron populations 1.21781 0.95023 1.02576 1.01782 1.21426 0.96644 0.91488 1.03581 1.23332 0.93794 0.98463 0.90576 0.90417 1.22617 0.96750 0.97257 1.00692 1.21529 0.82921 0.87671 0.86319 1.90522 1.28220 1.60581 1.71749 1.43472 1.06298 1.25756 1.37029 1.18703 1.18268 0.97680 1.14419 0.92779 1.26078 0.94997 1.01854 0.94886 1.69955 1.24352 1.29659 1.28489 0.86267 0.75857 0.82737 0.80673 1.22676 1.07512 1.21011 1.64804 0.98673 1.21165 1.31673 0.91057 0.92125 0.93622 0.91401 0.88246 0.86866 0.86306 0.90617 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.82 71.99 0.71 -2.17 15 2 C -0.09 -1.89 5.63 30.60 0.17 -1.71 15 3 C 0.05 1.32 3.58 45.29 0.16 1.48 15 4 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 5 C -0.13 -4.28 6.66 30.82 0.21 -4.08 15 6 C 0.43 21.05 8.11 88.04 0.71 21.76 15 7 O -0.63 -36.94 17.71 -3.08 -0.05 -36.99 15 8 N -0.32 -15.99 3.13 -306.04 -0.96 -16.95 15 9 C -0.36 -21.76 10.00 84.04 0.84 -20.92 15 10 H 0.05 3.77 8.03 -2.91 -0.02 3.74 15 11 C 0.03 1.57 5.26 84.93 0.45 2.01 15 12 N -0.89 -52.28 13.96 21.66 0.30 -51.98 15 13 Si 0.92 40.72 27.24 68.60 1.87 42.59 15 14 H -0.30 -14.02 7.11 99.48 0.71 -13.31 15 15 H -0.15 -5.88 5.23 99.48 0.52 -5.36 15 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 17 N -0.44 -16.74 3.31 -163.94 -0.54 -17.28 15 18 H 0.07 1.08 8.14 -2.39 -0.02 1.06 15 19 H 0.06 1.01 8.14 -2.39 -0.02 0.99 15 20 H 0.04 1.01 7.87 -2.38 -0.02 0.99 15 21 H 0.07 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.10 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.11 3.08 8.14 -2.39 -0.02 3.06 15 24 H 0.12 3.34 7.91 -2.39 -0.02 3.32 15 25 H 0.28 15.26 8.31 -92.70 -0.77 14.49 15 26 H 0.34 12.70 8.04 -210.71 -1.69 11.01 15 Total: -1.00 -73.81 222.85 3.16 -70.65 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.71 Total: 13.58 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 3.25 Total: -3.62 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -1.20 Total: -86.20 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.05 Total: -36.99 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.87 Total: 42.59 kcal Total: -73.81 3.16 -70.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260943404.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.916 kcal (2) G-P(sol) polarization free energy of solvation -73.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds