Wall clock time and date at job start Mon Mar 30 2020 02:08:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09000 * 110.84087 * 2 1
4 4 C 1.54787 * 110.97981 * 123.76627 * 2 1 3
5 5 C 1.51810 * 102.23309 * 142.15432 * 4 2 1
6 6 O 1.21297 * 126.03566 * 165.19141 * 5 4 2
7 7 N 1.34588 * 107.92490 * 345.17531 * 5 4 2
8 8 C 1.37093 * 123.52703 * 178.40993 * 7 5 4
9 9 H 1.08000 * 120.00220 * 146.31194 * 8 7 5
10 10 C 1.38946 * 120.00144 * 326.30108 * 8 7 5
11 11 N 1.31418 * 119.99719 * 339.99559 * 10 8 7
12 12 Si 1.86802 * 120.00189 * 159.99812 * 10 8 7
13 13 H 1.48496 * 109.47265 * 94.62194 * 12 10 8
14 14 H 1.48503 * 109.46944 * 214.62297 * 12 10 8
15 15 H 1.48502 * 109.46866 * 334.62019 * 12 10 8
16 16 N 1.36340 * 112.94295 * 358.40087 * 7 5 4
17 17 C 1.46894 * 111.00400 * 256.74077 * 16 7 5
18 18 H 1.08995 * 109.47388 * 180.69910 * 1 2 3
19 19 H 1.08998 * 109.46793 * 300.69749 * 1 2 3
20 20 H 1.09000 * 109.47192 * 60.69669 * 1 2 3
21 21 H 1.09005 * 110.84729 * 260.33618 * 4 2 1
22 22 H 1.08995 * 110.85341 * 23.96687 * 4 2 1
23 23 H 0.97004 * 119.99354 * 179.97438 * 11 10 8
24 24 H 1.09002 * 109.47386 * 179.97438 * 17 16 7
25 25 H 1.08997 * 109.47529 * 299.94521 * 17 16 7
26 26 H 1.09003 * 109.46782 * 59.94287 * 17 16 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9178 1.0187 0.0000
4 6 2.0842 -0.8033 1.2015
5 6 3.2933 -1.4938 0.5965
6 8 4.1889 -2.0332 1.2115
7 7 3.1958 -1.4020 -0.7427
8 6 4.1399 -1.8943 -1.6062
9 1 3.8400 -2.2943 -2.5635
10 6 5.4828 -1.8785 -1.2499
11 7 5.9023 -1.0674 -0.3048
12 14 6.6919 -3.0100 -2.1143
13 1 7.3379 -2.2808 -3.2350
14 1 7.7297 -3.4551 -1.1498
15 1 5.9693 -4.1938 -2.6451
16 7 2.0596 -0.7683 -1.1506
17 6 1.0663 -1.7327 -1.6417
18 1 -0.3634 -1.0275 0.0125
19 1 -0.3633 0.5246 0.8837
20 1 -0.3633 0.5030 -0.8962
21 1 2.3828 -0.1357 2.0098
22 1 1.3541 -1.5338 1.5497
23 1 6.8398 -1.0567 -0.0558
24 1 0.1698 -1.2006 -1.9602
25 1 1.4808 -2.2831 -2.4862
26 1 0.8113 -2.4298 -0.8435
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260944074.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:08:09
Heat of formation + Delta-G solvation = 23.982819 kcal
Electronic energy + Delta-G solvation = -11813.631668 eV
Core-core repulsion = 9701.600859 eV
Total energy + Delta-G solvation = -2112.030809 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 184.095 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-39.91377 -35.77365 -33.47995 -31.41661 -29.93191 -27.38417 -25.08659 -23.78575
-20.36445 -19.47087 -16.84562 -15.83363 -15.18331 -14.79857 -14.05582 -13.57565
-13.19533 -12.52824 -12.37484 -12.06333 -11.77083 -11.47797 -11.16149 -11.00458
-10.85708 -10.59727 -10.41156 -10.21278 -9.11444 -8.68689 -7.65936 -6.99962
-6.11274 -3.77922 3.30818 3.37013 3.41428 4.02833 4.23533 4.58252
5.14961 5.26808 5.37922 5.41909 5.59392 5.75110 5.90477 6.00833
6.11448 6.18037 6.22608 6.43675 6.59551 6.83778 7.39317 7.62938
8.32519 8.96359 9.32913 9.72827 10.35850 10.97302
Molecular weight = 184.10amu
Principal moments of inertia in cm(-1)
A = 0.064056 B = 0.015494 C = 0.013570
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 437.009291 B = 1806.721512 C = 2062.929724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.055 3.945
3 H 0.096 0.904
4 C -0.184 4.184
5 C 0.456 3.544
6 O -0.527 6.527
7 N -0.306 5.306
8 C -0.321 4.321
9 H 0.087 0.913
10 C 0.051 3.949
11 N -0.822 5.822
12 Si 0.925 3.075
13 H -0.280 1.280
14 H -0.283 1.283
15 H -0.271 1.271
16 N -0.307 5.307
17 C 0.000 4.000
18 H 0.059 0.941
19 H 0.061 0.939
20 H 0.063 0.937
21 H 0.087 0.913
22 H 0.080 0.920
23 H 0.266 0.734
24 H 0.070 0.930
25 H 0.069 0.931
26 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.998 1.195 -0.966 9.128
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.053 4.053
3 H 0.114 0.886
4 C -0.226 4.226
5 C 0.241 3.759
6 O -0.402 6.402
7 N -0.117 5.117
8 C -0.448 4.448
9 H 0.104 0.896
10 C -0.160 4.160
11 N -0.456 5.456
12 Si 0.751 3.249
13 H -0.206 1.206
14 H -0.208 1.208
15 H -0.195 1.195
16 N -0.122 5.122
17 C -0.148 4.148
18 H 0.078 0.922
19 H 0.080 0.920
20 H 0.082 0.918
21 H 0.106 0.894
22 H 0.099 0.901
23 H 0.076 0.924
24 H 0.088 0.912
25 H 0.087 0.913
26 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges -8.202 1.281 -0.992 8.360
hybrid contribution 0.270 -0.805 0.289 0.897
sum -7.932 0.476 -0.703 7.977
Atomic orbital electron populations
1.22038 0.94386 1.02202 1.02057 1.22988 0.94451 0.98787 0.89066
0.88566 1.22934 0.99719 1.00776 0.99188 1.20335 0.87645 0.85053
0.82863 1.90526 1.37535 1.47259 1.64930 1.43395 1.12953 1.50448
1.04912 1.18982 0.84962 1.38898 1.01932 0.89559 1.25250 0.97408
0.96407 0.96979 1.69952 1.15948 1.31723 1.27945 0.85994 0.80014
0.80422 0.78434 1.20645 1.20818 1.19520 1.64834 0.99392 1.18960
1.29041 1.23004 0.95841 0.95832 1.00156 0.92157 0.91999 0.91768
0.89448 0.90111 0.92397 0.91187 0.91257 0.95806
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.99 7.95 37.16 0.30 -1.70 15
2 C 0.06 1.02 4.13 -66.08 -0.27 0.75 15
3 H 0.10 1.79 8.14 -51.93 -0.42 1.36 15
4 C -0.18 -3.81 6.60 -26.39 -0.17 -3.98 15
5 C 0.46 12.63 7.39 -10.52 -0.08 12.55 15
6 O -0.53 -16.74 15.33 5.54 0.08 -16.66 15
7 N -0.31 -8.32 2.67 -10.64 -0.03 -8.35 15
8 C -0.32 -9.25 9.73 -14.94 -0.15 -9.40 15
9 H 0.09 2.36 7.77 -52.49 -0.41 1.95 15
10 C 0.05 1.48 4.73 -17.47 -0.08 1.40 15
11 N -0.82 -25.49 11.24 55.50 0.62 -24.87 15
12 Si 0.93 22.24 29.60 -169.99 -5.03 17.21 15
13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15
14 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15
15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15
16 N -0.31 -6.83 5.59 -112.12 -0.63 -7.46 15
17 C 0.00 0.01 8.47 60.06 0.51 0.52 15
18 H 0.06 0.79 6.43 -51.93 -0.33 0.45 15
19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15
20 H 0.06 0.78 7.75 -51.93 -0.40 0.38 15
21 H 0.09 1.70 8.14 -51.93 -0.42 1.28 15
22 H 0.08 1.49 7.90 -51.93 -0.41 1.08 15
23 H 0.27 7.81 8.31 -40.82 -0.34 7.47 15
24 H 0.07 1.02 6.56 -51.93 -0.34 0.68 15
25 H 0.07 1.31 7.89 -51.93 -0.41 0.90 15
26 H 0.02 0.43 7.59 -51.93 -0.39 0.03 15
LS Contribution 219.35 15.07 3.31 3.31
Total: -1.00 -34.50 219.35 -4.72 -39.22
By element:
Atomic # 1 Polarization: 0.56 SS G_CDS: -3.10 Total: -2.54 kcal
Atomic # 6 Polarization: 0.09 SS G_CDS: 0.05 Total: 0.14 kcal
Atomic # 7 Polarization: -40.65 SS G_CDS: -0.03 Total: -40.68 kcal
Atomic # 8 Polarization: -16.74 SS G_CDS: 0.08 Total: -16.66 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal
Total LS contribution 3.31 Total: 3.31 kcal
Total: -34.50 -4.72 -39.22 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260944074.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.206 kcal
(2) G-P(sol) polarization free energy of solvation -34.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds