Wall clock time and date at job start Mon Mar 30 2020 02:08:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09000 * 110.84087 * 2 1
4 4 C 1.54787 * 110.97981 * 123.76627 * 2 1 3
5 5 C 1.51810 * 102.23309 * 142.15432 * 4 2 1
6 6 O 1.21297 * 126.03566 * 165.19141 * 5 4 2
7 7 N 1.34588 * 107.92490 * 345.17531 * 5 4 2
8 8 C 1.37093 * 123.52703 * 178.40993 * 7 5 4
9 9 H 1.08000 * 120.00220 * 146.31194 * 8 7 5
10 10 C 1.38946 * 120.00144 * 326.30108 * 8 7 5
11 11 N 1.31418 * 119.99719 * 339.99559 * 10 8 7
12 12 Si 1.86802 * 120.00189 * 159.99812 * 10 8 7
13 13 H 1.48496 * 109.47265 * 94.62194 * 12 10 8
14 14 H 1.48503 * 109.46944 * 214.62297 * 12 10 8
15 15 H 1.48502 * 109.46866 * 334.62019 * 12 10 8
16 16 N 1.36340 * 112.94295 * 358.40087 * 7 5 4
17 17 C 1.46894 * 111.00400 * 256.74077 * 16 7 5
18 18 H 1.08995 * 109.47388 * 180.69910 * 1 2 3
19 19 H 1.08998 * 109.46793 * 300.69749 * 1 2 3
20 20 H 1.09000 * 109.47192 * 60.69669 * 1 2 3
21 21 H 1.09005 * 110.84729 * 260.33618 * 4 2 1
22 22 H 1.08995 * 110.85341 * 23.96687 * 4 2 1
23 23 H 0.97004 * 119.99354 * 179.97438 * 11 10 8
24 24 H 1.09002 * 109.47386 * 179.97438 * 17 16 7
25 25 H 1.08997 * 109.47529 * 299.94521 * 17 16 7
26 26 H 1.09003 * 109.46782 * 59.94287 * 17 16 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9178 1.0187 0.0000
4 6 2.0842 -0.8033 1.2015
5 6 3.2933 -1.4938 0.5965
6 8 4.1889 -2.0332 1.2115
7 7 3.1958 -1.4020 -0.7427
8 6 4.1399 -1.8943 -1.6062
9 1 3.8400 -2.2943 -2.5635
10 6 5.4828 -1.8785 -1.2499
11 7 5.9023 -1.0674 -0.3048
12 14 6.6919 -3.0100 -2.1143
13 1 7.3379 -2.2808 -3.2350
14 1 7.7297 -3.4551 -1.1498
15 1 5.9693 -4.1938 -2.6451
16 7 2.0596 -0.7683 -1.1506
17 6 1.0663 -1.7327 -1.6417
18 1 -0.3634 -1.0275 0.0125
19 1 -0.3633 0.5246 0.8837
20 1 -0.3633 0.5030 -0.8962
21 1 2.3828 -0.1357 2.0098
22 1 1.3541 -1.5338 1.5497
23 1 6.8398 -1.0567 -0.0558
24 1 0.1698 -1.2006 -1.9602
25 1 1.4808 -2.2831 -2.4862
26 1 0.8113 -2.4298 -0.8435
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260944074.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:08:09
Heat of formation + Delta-G solvation = -1.826161 kcal
Electronic energy + Delta-G solvation = -11814.750830 eV
Core-core repulsion = 9701.600859 eV
Total energy + Delta-G solvation = -2113.149970 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 184.095 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-41.71950 -37.79662 -35.45273 -33.29701 -31.64457 -29.03439 -26.78043 -25.62699
-22.19912 -21.19367 -18.84667 -17.55324 -17.23602 -16.51586 -15.86985 -15.42893
-14.91949 -14.39378 -13.90901 -13.66593 -13.34688 -13.15313 -12.91078 -12.72245
-12.36929 -12.31323 -12.13885 -11.99214 -11.12674 -10.68100 -9.68295 -8.97329
-8.28591 -6.00717 1.37186 1.43935 1.54308 2.11678 2.25783 2.71028
3.14735 3.58835 3.85553 3.93818 4.04551 4.39291 4.58185 4.63335
4.72641 4.86447 4.93914 5.15293 5.18934 5.31769 5.39175 5.89342
6.17895 6.84481 7.22378 7.68193 8.29313 8.80127
Molecular weight = 184.10amu
Principal moments of inertia in cm(-1)
A = 0.064056 B = 0.015494 C = 0.013570
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 437.009291 B = 1806.721512 C = 2062.929724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.058 3.942
3 H 0.091 0.909
4 C -0.170 4.170
5 C 0.426 3.574
6 O -0.587 6.587
7 N -0.319 5.319
8 C -0.344 4.344
9 H 0.093 0.907
10 C -0.006 4.006
11 N -0.866 5.866
12 Si 0.996 3.004
13 H -0.261 1.261
14 H -0.290 1.290
15 H -0.258 1.258
16 N -0.329 5.329
17 C 0.004 3.996
18 H 0.068 0.932
19 H 0.089 0.911
20 H 0.082 0.918
21 H 0.096 0.904
22 H 0.107 0.893
23 H 0.263 0.737
24 H 0.115 0.885
25 H 0.055 0.945
26 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.991 1.321 -1.753 11.208
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.050 4.050
3 H 0.109 0.891
4 C -0.212 4.212
5 C 0.213 3.787
6 O -0.467 6.467
7 N -0.128 5.128
8 C -0.471 4.471
9 H 0.111 0.889
10 C -0.213 4.213
11 N -0.502 5.502
12 Si 0.818 3.182
13 H -0.186 1.186
14 H -0.216 1.216
15 H -0.182 1.182
16 N -0.145 5.145
17 C -0.144 4.144
18 H 0.087 0.913
19 H 0.107 0.893
20 H 0.101 0.899
21 H 0.115 0.885
22 H 0.125 0.875
23 H 0.072 0.928
24 H 0.133 0.867
25 H 0.074 0.926
26 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges -10.243 1.424 -1.820 10.501
hybrid contribution 0.784 -0.802 0.509 1.232
sum -9.459 0.622 -1.311 9.569
Atomic orbital electron populations
1.22009 0.89638 1.03487 1.04409 1.23187 0.98029 0.97437 0.86299
0.89083 1.22895 0.97129 1.01163 1.00015 1.21529 0.88844 0.84933
0.83425 1.90460 1.40278 1.49763 1.66190 1.43606 1.14238 1.50009
1.04910 1.19399 0.85864 1.39478 1.02356 0.88899 1.26352 0.99527
0.97658 0.97727 1.70087 1.16073 1.33741 1.30254 0.84926 0.77186
0.78626 0.77448 1.18628 1.21563 1.18192 1.64711 0.99146 1.19952
1.30654 1.23053 0.96185 0.95685 0.99503 0.91337 0.89260 0.89896
0.88508 0.87456 0.92807 0.86690 0.92645 0.95563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.00 7.95 71.98 0.57 -2.43 15
2 C 0.06 2.00 4.13 45.29 0.19 2.19 15
3 H 0.09 3.20 8.14 -2.39 -0.02 3.18 15
4 C -0.17 -6.79 6.60 30.81 0.20 -6.59 15
5 C 0.43 23.90 7.39 88.04 0.65 24.55 15
6 O -0.59 -38.61 15.33 -3.08 -0.05 -38.66 15
7 N -0.32 -17.43 2.67 -306.08 -0.82 -18.24 15
8 C -0.34 -20.09 9.73 84.04 0.82 -19.27 15
9 H 0.09 5.11 7.77 -2.91 -0.02 5.09 15
10 C -0.01 -0.37 4.73 84.92 0.40 0.04 15
11 N -0.87 -55.53 11.24 21.66 0.24 -55.29 15
12 Si 1.00 46.35 29.60 68.60 2.03 48.38 15
13 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15
14 H -0.29 -13.68 7.11 99.48 0.71 -12.97 15
15 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15
16 N -0.33 -14.10 5.59 -508.65 -2.84 -16.94 15
17 C 0.00 0.13 8.47 127.69 1.08 1.21 15
18 H 0.07 1.42 6.43 -2.39 -0.02 1.41 15
19 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15
20 H 0.08 1.55 7.75 -2.39 -0.02 1.54 15
21 H 0.10 3.65 8.14 -2.38 -0.02 3.63 15
22 H 0.11 3.67 7.90 -2.39 -0.02 3.65 15
23 H 0.26 16.05 8.31 -92.71 -0.77 15.28 15
24 H 0.11 2.83 6.56 -2.39 -0.02 2.82 15
25 H 0.05 2.00 7.89 -2.39 -0.02 1.99 15
26 H 0.03 0.87 7.59 -2.39 -0.02 0.85 15
Total: -1.00 -77.92 219.35 3.65 -74.28
By element:
Atomic # 1 Polarization: 5.63 SS G_CDS: 1.16 Total: 6.79 kcal
Atomic # 6 Polarization: -4.23 SS G_CDS: 3.91 Total: -0.31 kcal
Atomic # 7 Polarization: -87.06 SS G_CDS: -3.41 Total: -90.47 kcal
Atomic # 8 Polarization: -38.61 SS G_CDS: -0.05 Total: -38.66 kcal
Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal
Total: -77.92 3.65 -74.28 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260944074.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.451 kcal
(2) G-P(sol) polarization free energy of solvation -77.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds