Wall clock time and date at job start Mon Mar 30 2020 02:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.84087 * 2 1 4 4 C 1.54787 * 110.97981 * 123.76627 * 2 1 3 5 5 C 1.51810 * 102.23309 * 142.15432 * 4 2 1 6 6 O 1.21297 * 126.03566 * 165.19141 * 5 4 2 7 7 N 1.34588 * 107.92490 * 345.17531 * 5 4 2 8 8 C 1.37093 * 123.52703 * 178.40993 * 7 5 4 9 9 H 1.08000 * 120.00220 * 146.31194 * 8 7 5 10 10 C 1.38946 * 120.00144 * 326.30108 * 8 7 5 11 11 N 1.31418 * 119.99719 * 339.99559 * 10 8 7 12 12 Si 1.86802 * 120.00189 * 159.99812 * 10 8 7 13 13 H 1.48496 * 109.47265 * 94.62194 * 12 10 8 14 14 H 1.48503 * 109.46944 * 214.62297 * 12 10 8 15 15 H 1.48502 * 109.46866 * 334.62019 * 12 10 8 16 16 N 1.36340 * 112.94295 * 358.40087 * 7 5 4 17 17 C 1.46894 * 111.00400 * 256.74077 * 16 7 5 18 18 H 1.08995 * 109.47388 * 180.69910 * 1 2 3 19 19 H 1.08998 * 109.46793 * 300.69749 * 1 2 3 20 20 H 1.09000 * 109.47192 * 60.69669 * 1 2 3 21 21 H 1.09005 * 110.84729 * 260.33618 * 4 2 1 22 22 H 1.08995 * 110.85341 * 23.96687 * 4 2 1 23 23 H 0.97004 * 119.99354 * 179.97438 * 11 10 8 24 24 H 1.09002 * 109.47386 * 179.97438 * 17 16 7 25 25 H 1.08997 * 109.47529 * 299.94521 * 17 16 7 26 26 H 1.09003 * 109.46782 * 59.94287 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0842 -0.8033 1.2015 5 6 3.2933 -1.4938 0.5965 6 8 4.1889 -2.0332 1.2115 7 7 3.1958 -1.4020 -0.7427 8 6 4.1399 -1.8943 -1.6062 9 1 3.8400 -2.2943 -2.5635 10 6 5.4828 -1.8785 -1.2499 11 7 5.9023 -1.0674 -0.3048 12 14 6.6919 -3.0100 -2.1143 13 1 7.3379 -2.2808 -3.2350 14 1 7.7297 -3.4551 -1.1498 15 1 5.9693 -4.1938 -2.6451 16 7 2.0596 -0.7683 -1.1506 17 6 1.0663 -1.7327 -1.6417 18 1 -0.3634 -1.0275 0.0125 19 1 -0.3633 0.5246 0.8837 20 1 -0.3633 0.5030 -0.8962 21 1 2.3828 -0.1357 2.0098 22 1 1.3541 -1.5338 1.5497 23 1 6.8398 -1.0567 -0.0558 24 1 0.1698 -1.2006 -1.9602 25 1 1.4808 -2.2831 -2.4862 26 1 0.8113 -2.4298 -0.8435 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260944074.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:09 Heat of formation + Delta-G solvation = -1.826161 kcal Electronic energy + Delta-G solvation = -11814.750830 eV Core-core repulsion = 9701.600859 eV Total energy + Delta-G solvation = -2113.149970 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.71950 -37.79662 -35.45273 -33.29701 -31.64457 -29.03439 -26.78043 -25.62699 -22.19912 -21.19367 -18.84667 -17.55324 -17.23602 -16.51586 -15.86985 -15.42893 -14.91949 -14.39378 -13.90901 -13.66593 -13.34688 -13.15313 -12.91078 -12.72245 -12.36929 -12.31323 -12.13885 -11.99214 -11.12674 -10.68100 -9.68295 -8.97329 -8.28591 -6.00717 1.37186 1.43935 1.54308 2.11678 2.25783 2.71028 3.14735 3.58835 3.85553 3.93818 4.04551 4.39291 4.58185 4.63335 4.72641 4.86447 4.93914 5.15293 5.18934 5.31769 5.39175 5.89342 6.17895 6.84481 7.22378 7.68193 8.29313 8.80127 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.064056 B = 0.015494 C = 0.013570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.009291 B = 1806.721512 C = 2062.929724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 H 0.091 0.909 4 C -0.170 4.170 5 C 0.426 3.574 6 O -0.587 6.587 7 N -0.319 5.319 8 C -0.344 4.344 9 H 0.093 0.907 10 C -0.006 4.006 11 N -0.866 5.866 12 Si 0.996 3.004 13 H -0.261 1.261 14 H -0.290 1.290 15 H -0.258 1.258 16 N -0.329 5.329 17 C 0.004 3.996 18 H 0.068 0.932 19 H 0.089 0.911 20 H 0.082 0.918 21 H 0.096 0.904 22 H 0.107 0.893 23 H 0.263 0.737 24 H 0.115 0.885 25 H 0.055 0.945 26 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 1.321 -1.753 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.050 4.050 3 H 0.109 0.891 4 C -0.212 4.212 5 C 0.213 3.787 6 O -0.467 6.467 7 N -0.128 5.128 8 C -0.471 4.471 9 H 0.111 0.889 10 C -0.213 4.213 11 N -0.502 5.502 12 Si 0.818 3.182 13 H -0.186 1.186 14 H -0.216 1.216 15 H -0.182 1.182 16 N -0.145 5.145 17 C -0.144 4.144 18 H 0.087 0.913 19 H 0.107 0.893 20 H 0.101 0.899 21 H 0.115 0.885 22 H 0.125 0.875 23 H 0.072 0.928 24 H 0.133 0.867 25 H 0.074 0.926 26 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.243 1.424 -1.820 10.501 hybrid contribution 0.784 -0.802 0.509 1.232 sum -9.459 0.622 -1.311 9.569 Atomic orbital electron populations 1.22009 0.89638 1.03487 1.04409 1.23187 0.98029 0.97437 0.86299 0.89083 1.22895 0.97129 1.01163 1.00015 1.21529 0.88844 0.84933 0.83425 1.90460 1.40278 1.49763 1.66190 1.43606 1.14238 1.50009 1.04910 1.19399 0.85864 1.39478 1.02356 0.88899 1.26352 0.99527 0.97658 0.97727 1.70087 1.16073 1.33741 1.30254 0.84926 0.77186 0.78626 0.77448 1.18628 1.21563 1.18192 1.64711 0.99146 1.19952 1.30654 1.23053 0.96185 0.95685 0.99503 0.91337 0.89260 0.89896 0.88508 0.87456 0.92807 0.86690 0.92645 0.95563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 7.95 71.98 0.57 -2.43 15 2 C 0.06 2.00 4.13 45.29 0.19 2.19 15 3 H 0.09 3.20 8.14 -2.39 -0.02 3.18 15 4 C -0.17 -6.79 6.60 30.81 0.20 -6.59 15 5 C 0.43 23.90 7.39 88.04 0.65 24.55 15 6 O -0.59 -38.61 15.33 -3.08 -0.05 -38.66 15 7 N -0.32 -17.43 2.67 -306.08 -0.82 -18.24 15 8 C -0.34 -20.09 9.73 84.04 0.82 -19.27 15 9 H 0.09 5.11 7.77 -2.91 -0.02 5.09 15 10 C -0.01 -0.37 4.73 84.92 0.40 0.04 15 11 N -0.87 -55.53 11.24 21.66 0.24 -55.29 15 12 Si 1.00 46.35 29.60 68.60 2.03 48.38 15 13 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 14 H -0.29 -13.68 7.11 99.48 0.71 -12.97 15 15 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 16 N -0.33 -14.10 5.59 -508.65 -2.84 -16.94 15 17 C 0.00 0.13 8.47 127.69 1.08 1.21 15 18 H 0.07 1.42 6.43 -2.39 -0.02 1.41 15 19 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.08 1.55 7.75 -2.39 -0.02 1.54 15 21 H 0.10 3.65 8.14 -2.38 -0.02 3.63 15 22 H 0.11 3.67 7.90 -2.39 -0.02 3.65 15 23 H 0.26 16.05 8.31 -92.71 -0.77 15.28 15 24 H 0.11 2.83 6.56 -2.39 -0.02 2.82 15 25 H 0.05 2.00 7.89 -2.39 -0.02 1.99 15 26 H 0.03 0.87 7.59 -2.39 -0.02 0.85 15 Total: -1.00 -77.92 219.35 3.65 -74.28 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.16 Total: 6.79 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 3.91 Total: -0.31 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -3.41 Total: -90.47 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.05 Total: -38.66 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.92 3.65 -74.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944074.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.451 kcal (2) G-P(sol) polarization free energy of solvation -77.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds