Wall clock time and date at job start Mon Mar 30 2020 02:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 120.00001 * 2 1 4 4 H 1.48493 * 109.47066 * 275.23817 * 3 2 1 5 5 H 1.48496 * 109.46855 * 35.24251 * 3 2 1 6 6 H 1.48506 * 109.46585 * 155.23977 * 3 2 1 7 7 C 1.38945 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00088 * 340.50421 * 7 2 1 9 9 N 1.37098 * 120.00159 * 160.50877 * 7 2 1 10 10 C 1.47260 * 119.94865 * 134.65998 * 9 7 2 11 11 C 1.53065 * 108.55943 * 109.32580 * 10 9 7 12 12 N 1.45561 * 110.85417 * 85.73195 * 11 10 9 13 13 C 1.45581 * 116.02185 * 291.54466 * 12 11 10 14 14 C 1.53147 * 110.68947 * 68.20975 * 13 12 11 15 15 C 1.33628 * 119.94670 * 314.67809 * 9 7 2 16 16 O 1.21291 * 120.05269 * 0.22644 * 15 9 7 17 17 H 0.97007 * 119.99593 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.62696 * 349.60305 * 10 9 7 19 19 H 1.08998 * 109.62111 * 229.04510 * 10 9 7 20 20 H 1.08999 * 109.20065 * 325.38552 * 11 10 9 21 21 H 1.08994 * 109.19821 * 206.09045 * 11 10 9 22 22 H 1.00902 * 110.99898 * 163.61970 * 12 11 10 23 23 H 1.08998 * 109.23895 * 188.52481 * 13 12 11 24 24 H 1.08999 * 109.23167 * 307.90151 * 13 12 11 25 25 H 1.09000 * 109.67713 * 35.58466 * 14 13 12 26 26 H 1.08994 * 109.68583 * 156.14372 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.3850 2.1103 -1.3942 5 1 1.5054 2.6181 0.8079 6 1 3.5967 1.4106 0.5864 7 6 2.0089 -1.2033 -0.0005 8 1 1.5153 -2.1120 0.3112 9 7 3.3209 -1.2372 -0.3967 10 6 4.3089 -1.9885 0.3957 11 6 4.7266 -3.2298 -0.3964 12 7 5.8079 -2.9162 -1.3191 13 6 5.4634 -2.0468 -2.4349 14 6 5.1502 -0.6313 -1.9412 15 6 3.7012 -0.5882 -1.5011 16 8 2.8875 0.0339 -2.1507 17 1 -0.4850 0.8401 0.0004 18 1 3.8640 -2.2916 1.3435 19 1 5.1815 -1.3622 0.5817 20 1 3.8704 -3.6000 -0.9603 21 1 5.0595 -4.0022 0.2968 22 1 6.2624 -3.7569 -1.6426 23 1 6.3010 -2.0071 -3.1312 24 1 4.5900 -2.4497 -2.9476 25 1 5.7969 -0.3848 -1.0991 26 1 5.3099 0.0830 -2.7489 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946758.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:12 Heat of formation + Delta-G solvation = -44.580726 kcal Electronic energy + Delta-G solvation = -11858.005272 eV Core-core repulsion = 9743.001325 eV Total energy + Delta-G solvation = -2115.003948 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.13354 -37.72421 -36.09753 -34.04624 -32.16276 -29.46141 -26.19276 -24.99320 -22.06733 -21.07751 -18.92010 -17.98127 -17.54439 -16.81498 -15.85153 -15.76362 -15.40847 -14.78233 -14.22775 -14.14874 -13.75554 -13.23153 -13.09414 -12.60219 -12.49071 -12.11788 -11.94588 -11.92275 -10.84112 -10.37541 -9.63119 -9.32780 -8.48336 -6.25717 1.17682 1.30970 1.42490 1.94856 2.38848 2.72188 3.05953 3.21736 3.79012 4.15751 4.29396 4.34269 4.39040 4.50661 4.72078 4.89895 4.96997 5.02463 5.14410 5.68097 5.81969 6.13261 6.61907 6.74428 6.90120 7.31779 7.89050 8.61733 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.056593 B = 0.018052 C = 0.015903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.638435 B = 1550.714990 C = 1760.212818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.043 3.957 3 Si 0.958 3.042 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.354 4.354 8 H 0.066 0.934 9 N -0.476 5.476 10 C 0.097 3.903 11 C 0.062 3.938 12 N -0.701 5.701 13 C 0.088 3.912 14 C -0.129 4.129 15 C 0.437 3.563 16 O -0.612 6.612 17 H 0.273 0.727 18 H 0.090 0.910 19 H 0.085 0.915 20 H 0.007 0.993 21 H 0.116 0.884 22 H 0.366 0.634 23 H 0.119 0.881 24 H 0.006 0.994 25 H 0.106 0.894 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.776 -5.050 -0.375 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.162 4.162 3 Si 0.786 3.214 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.083 0.917 9 N -0.198 5.198 10 C -0.025 4.025 11 C -0.068 4.068 12 N -0.336 5.336 13 C -0.042 4.042 14 C -0.169 4.169 15 C 0.228 3.772 16 O -0.499 6.499 17 H 0.083 0.917 18 H 0.109 0.891 19 H 0.104 0.896 20 H 0.026 0.974 21 H 0.134 0.866 22 H 0.188 0.812 23 H 0.137 0.863 24 H 0.024 0.976 25 H 0.124 0.876 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.373 -4.201 -0.294 14.977 hybrid contribution -1.022 0.195 -0.532 1.169 sum 13.351 -4.006 -0.826 13.963 Atomic orbital electron populations 1.69853 1.08050 1.28769 1.48085 1.26025 0.95492 1.02347 0.92303 0.85588 0.79397 0.79545 0.76914 1.21147 1.22018 1.18142 1.18773 0.86747 0.94705 1.47867 0.91655 1.43938 1.07761 1.46860 1.21229 1.22229 0.91696 0.93612 0.94988 1.21963 0.92110 0.97057 0.95653 1.57839 1.31986 1.23069 1.20756 1.21388 1.00151 0.90457 0.92204 1.22075 0.90997 1.00242 1.03624 1.21629 0.92452 0.82233 0.80923 1.90511 1.56357 1.46505 1.56497 0.91741 0.89137 0.89642 0.97428 0.86571 0.81246 0.86330 0.97588 0.87621 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.06 13.96 21.66 0.30 -58.76 15 2 C 0.04 2.65 4.82 84.92 0.41 3.06 15 3 Si 0.96 51.92 25.01 68.60 1.72 53.63 15 4 H -0.28 -16.55 6.49 99.48 0.65 -15.90 15 5 H -0.29 -15.03 7.11 99.48 0.71 -14.32 15 6 H -0.26 -12.81 7.11 99.48 0.71 -12.10 15 7 C -0.35 -21.02 9.56 84.04 0.80 -20.21 15 8 H 0.07 4.10 8.06 -2.91 -0.02 4.08 15 9 N -0.48 -23.38 2.11 -634.22 -1.34 -24.72 15 10 C 0.10 3.45 5.90 86.26 0.51 3.96 15 11 C 0.06 1.76 6.36 86.58 0.55 2.31 15 12 N -0.70 -16.61 6.34 -519.77 -3.30 -19.90 15 13 C 0.09 2.40 6.30 86.60 0.55 2.94 15 14 C -0.13 -4.42 5.62 30.15 0.17 -4.25 15 15 C 0.44 21.51 5.06 88.09 0.45 21.95 15 16 O -0.61 -36.66 13.05 -3.06 -0.04 -36.70 15 17 H 0.27 16.67 8.31 -92.70 -0.77 15.90 15 18 H 0.09 3.10 7.93 -2.39 -0.02 3.08 15 19 H 0.09 2.71 7.02 -2.39 -0.02 2.70 15 20 H 0.01 0.26 8.05 -2.39 -0.02 0.24 15 21 H 0.12 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.37 6.22 8.88 -89.69 -0.80 5.42 15 23 H 0.12 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.01 0.19 7.87 -2.39 -0.02 0.18 15 25 H 0.11 3.24 7.07 -2.39 -0.02 3.22 15 26 H 0.10 3.17 8.13 -2.39 -0.02 3.15 15 Total: -1.00 -77.48 212.42 1.10 -76.39 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: 0.32 Total: 0.29 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 3.43 Total: 9.77 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -4.33 Total: -103.38 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.04 Total: -36.70 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 1.72 Total: 53.63 kcal Total: -77.48 1.10 -76.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946758.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.807 kcal (2) G-P(sol) polarization free energy of solvation -77.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds