Wall clock time and date at job start Mon Mar 30 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.74130 * 46.23861 * 10 9 7 12 12 C 1.53499 * 113.47050 * 177.05729 * 10 9 7 13 13 C 1.53502 * 83.34224 * 140.84596 * 12 10 9 14 14 N 1.47064 * 87.98859 * 333.93447 * 13 12 10 15 15 C 1.34774 * 136.05772 * 207.08283 * 14 13 12 16 16 N 1.34779 * 119.99594 * 0.05194 * 15 14 13 17 17 O 1.21588 * 119.99986 * 180.02562 * 15 14 13 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08999 * 114.20885 * 254.43742 * 12 10 9 22 22 H 1.09000 * 114.20128 * 27.26476 * 12 10 9 23 23 H 1.09004 * 113.46782 * 219.14856 * 13 12 10 24 24 H 1.09001 * 113.51685 * 88.72507 * 13 12 10 25 25 H 0.96996 * 120.00174 * 359.97438 * 16 15 14 26 26 H 0.97002 * 119.99451 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 3.0474 -3.5306 0.7266 12 6 1.5735 -5.0405 0.0728 13 6 2.6759 -5.4316 -0.9212 14 7 2.7239 -4.0234 -1.3423 15 6 3.0596 -3.3570 -2.4647 16 7 3.4733 -4.0358 -3.5531 17 8 2.9888 -2.1436 -2.4955 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 1.6549 -5.5270 1.0448 22 1 0.5663 -5.0692 -0.3429 23 1 2.3340 -6.1077 -1.7048 24 1 3.5933 -5.7726 -0.4412 25 1 3.5298 -5.0038 -3.5285 26 1 3.7146 -3.5563 -4.3610 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260946809.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:25 Heat of formation + Delta-G solvation = 6.018656 kcal Electronic energy + Delta-G solvation = -11401.440150 eV Core-core repulsion = 9288.630356 eV Total energy + Delta-G solvation = -2112.809794 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.73308 -37.17480 -33.10766 -32.52070 -29.23403 -28.49517 -24.49094 -21.90765 -21.41386 -18.77287 -17.25239 -16.41205 -15.93603 -15.08938 -14.40545 -13.92983 -13.52237 -13.01683 -12.38806 -11.98383 -11.37452 -11.07560 -10.98590 -10.78468 -10.35310 -10.22708 -9.34988 -9.04749 -8.99177 -8.79521 -8.11419 -7.86485 -5.74578 -3.69708 3.32998 3.51168 3.57038 3.60780 4.04819 4.68832 4.72622 4.93356 5.45491 5.57860 5.63979 5.77225 6.02859 6.13387 6.26699 6.66188 6.89683 7.38734 7.55396 7.76199 7.99104 8.22412 8.62447 8.81678 9.29121 9.45971 9.90212 11.38118 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.046892 B = 0.014166 C = 0.011835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.968631 B = 1976.070822 C = 2365.253676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.053 3.947 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.477 4.477 8 H 0.051 0.949 9 C 0.020 3.980 10 C 0.161 3.839 11 H 0.077 0.923 12 C -0.158 4.158 13 C 0.098 3.902 14 N -0.656 5.656 15 C 0.720 3.280 16 N -0.878 5.878 17 O -0.547 6.547 18 H 0.255 0.745 19 H 0.028 0.972 20 H 0.023 0.977 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.386 0.614 26 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.075 -12.535 -2.524 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.515 4.515 8 H 0.070 0.930 9 C -0.018 4.018 10 C 0.058 3.942 11 H 0.095 0.905 12 C -0.196 4.196 13 C -0.026 4.026 14 N -0.398 5.398 15 C 0.421 3.579 16 N -0.448 5.448 17 O -0.420 6.420 18 H 0.065 0.935 19 H 0.046 0.954 20 H 0.041 0.959 21 H 0.098 0.902 22 H 0.109 0.891 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.212 0.788 26 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.891 -11.418 -2.566 12.683 hybrid contribution 0.687 0.566 -0.534 1.038 sum 5.578 -10.851 -3.100 12.588 Atomic orbital electron populations 1.69958 1.05925 1.26023 1.52975 1.24890 0.94732 0.98981 0.95971 0.86584 0.79591 0.83791 0.77876 1.20930 1.21744 1.20259 1.20976 0.92680 0.90385 1.47487 0.93030 1.19296 0.93431 0.91417 0.97607 1.22769 0.95703 0.95413 0.80315 0.90516 1.23516 0.98589 0.98364 0.99121 1.22819 0.98208 0.85039 0.96582 1.48859 1.70727 1.07828 1.12388 1.15431 0.78116 0.84960 0.79441 1.43053 1.76221 1.10053 1.15453 1.91136 1.58141 1.10683 1.82022 0.93511 0.95438 0.95873 0.90186 0.89145 0.91887 0.90999 0.78788 0.76171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.14 13.29 55.43 0.74 -28.40 15 2 C 0.05 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 24.18 29.54 -169.99 -5.02 19.16 15 4 H -0.28 -7.79 7.11 56.52 0.40 -7.39 15 5 H -0.29 -7.64 7.11 56.52 0.40 -7.23 15 6 H -0.28 -7.33 7.11 56.52 0.40 -6.92 15 7 C -0.48 -14.54 7.37 -34.44 -0.25 -14.80 15 8 H 0.05 1.61 7.72 -52.49 -0.41 1.20 15 9 C 0.02 0.53 4.59 -27.88 -0.13 0.40 15 10 C 0.16 3.33 3.90 -72.39 -0.28 3.05 15 11 H 0.08 1.56 8.14 -51.93 -0.42 1.14 15 12 C -0.16 -2.37 8.03 -26.21 -0.21 -2.58 15 13 C 0.10 1.31 8.28 -8.50 -0.07 1.24 15 14 N -0.66 -12.72 3.57 -183.18 -0.65 -13.37 15 15 C 0.72 15.32 8.97 -86.92 -0.78 14.54 15 16 N -0.88 -12.95 8.88 27.63 0.25 -12.70 15 17 O -0.55 -15.01 15.83 5.29 0.08 -14.92 15 18 H 0.26 7.79 8.31 -40.82 -0.34 7.45 15 19 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 20 H 0.02 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.09 1.40 8.12 -51.93 -0.42 0.98 15 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.39 4.29 8.54 -40.82 -0.35 3.94 15 26 H 0.41 5.38 8.93 -40.82 -0.36 5.02 15 LS Contribution 229.49 15.07 3.46 3.46 Total: -1.00 -37.18 229.49 -6.18 -43.37 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.21 Total: 0.01 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.82 Total: 3.41 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.33 Total: -54.48 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.08 Total: -14.92 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.02 Total: 19.16 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -37.18 -6.18 -43.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946809.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.386 kcal (2) G-P(sol) polarization free energy of solvation -37.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds