Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99974 * 2 1 4 4 H 1.48505 * 109.47040 * 270.00527 * 3 2 1 5 5 H 1.48501 * 109.47033 * 29.99760 * 3 2 1 6 6 H 1.48495 * 109.47440 * 150.00241 * 3 2 1 7 7 C 1.37872 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99752 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00185 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46957 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.74237 * 86.26074 * 10 9 7 12 12 N 1.47925 * 85.99684 * 138.00209 * 11 10 9 13 13 C 1.34780 * 134.49772 * 155.35643 * 12 11 10 14 14 N 1.34774 * 120.00188 * 359.97438 * 13 12 11 15 15 O 1.21584 * 119.99378 * 179.97438 * 13 12 11 16 16 C 1.47579 * 91.00789 * 335.35638 * 12 11 10 17 17 H 0.97001 * 120.00375 * 359.97438 * 1 2 3 18 18 H 1.08998 * 109.47456 * 60.00070 * 9 7 2 19 19 H 1.08998 * 109.47280 * 299.99342 * 9 7 2 20 20 H 1.09002 * 112.94408 * 314.66491 * 10 9 7 21 21 H 1.09006 * 113.76402 * 252.36366 * 11 10 9 22 22 H 1.08997 * 113.76968 * 23.74991 * 11 10 9 23 23 H 0.97005 * 119.99957 * 0.02562 * 14 13 12 24 24 H 0.96995 * 120.00092 * 179.97438 * 14 13 12 25 25 H 1.09003 * 113.77049 * 270.34039 * 16 12 11 26 26 H 1.08993 * 113.77081 * 138.93800 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 4.1410 -3.2518 -1.4071 12 7 5.4238 -3.8188 -0.9369 13 6 6.1722 -4.8827 -1.2900 14 7 5.7640 -5.6929 -2.2866 15 8 7.2157 -5.1114 -0.7092 16 6 5.5549 -2.7517 0.0740 17 1 -0.4851 0.8400 0.0004 18 1 3.8753 -0.6803 0.8888 19 1 3.8746 -0.6800 -0.8912 20 1 3.4983 -3.2721 0.7133 21 1 3.3804 -4.0018 -1.6244 22 1 4.2517 -2.5139 -2.2016 23 1 4.9317 -5.5102 -2.7501 24 1 6.3028 -6.4583 -2.5409 25 1 6.0801 -1.8672 -0.2865 26 1 5.9224 -3.1027 1.0382 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260952563.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = -30.294266 kcal Electronic energy + Delta-G solvation = -10961.806780 eV Core-core repulsion = 8847.422340 eV Total energy + Delta-G solvation = -2114.384440 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.27296 -39.00831 -35.09245 -34.54909 -32.34369 -28.80550 -27.04807 -24.66506 -21.62090 -20.44383 -18.89693 -18.81509 -17.95175 -16.94878 -16.14443 -15.97451 -15.22009 -14.65710 -14.56639 -13.93812 -13.62735 -13.28736 -12.81307 -12.32347 -12.00981 -11.77945 -11.52446 -11.07652 -11.06262 -10.73383 -10.67952 -9.58099 -8.21113 -6.24302 1.43326 1.46355 1.56532 1.68728 2.14282 2.43339 3.14854 3.25180 3.71496 4.17688 4.20803 4.47927 4.63275 4.72883 4.78871 4.91363 5.14779 5.42588 5.61503 5.71775 6.00493 6.17239 6.35681 6.84151 7.00050 7.40256 7.63525 8.95260 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.082352 B = 0.008950 C = 0.008463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.924086 B = 3127.662576 C = 3307.690773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.005 3.995 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.521 4.521 8 H 0.038 0.962 9 C -0.003 4.003 10 C -0.098 4.098 11 C 0.118 3.882 12 N -0.665 5.665 13 C 0.718 3.282 14 N -0.846 5.846 15 O -0.651 6.651 16 C 0.126 3.874 17 H 0.264 0.736 18 H 0.027 0.973 19 H 0.031 0.969 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.096 0.904 23 H 0.410 0.590 24 H 0.421 0.579 25 H 0.094 0.906 26 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 -5.098 -4.959 11.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.559 4.559 8 H 0.056 0.944 9 C -0.040 4.040 10 C -0.117 4.117 11 C -0.004 4.004 12 N -0.405 5.405 13 C 0.420 3.580 14 N -0.414 5.414 15 O -0.535 6.535 16 C 0.003 3.997 17 H 0.073 0.927 18 H 0.045 0.955 19 H 0.049 0.951 20 H 0.102 0.898 21 H 0.107 0.893 22 H 0.114 0.886 23 H 0.241 0.759 24 H 0.255 0.745 25 H 0.112 0.888 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.547 -5.194 -4.562 11.787 hybrid contribution -0.412 0.458 -0.262 0.669 sum 9.135 -4.737 -4.824 11.365 Atomic orbital electron populations 1.70067 1.08366 1.27940 1.53128 1.25952 0.95443 1.03324 0.94461 0.85739 0.79664 0.78602 0.79126 1.19183 1.21948 1.16621 1.21421 0.91814 0.93042 1.49585 0.94406 1.19491 0.94043 0.93047 0.97466 1.22868 0.93689 0.98007 0.97182 1.23412 0.82775 0.96463 0.97713 1.49351 1.25084 1.25997 1.40026 1.15743 0.81698 0.79966 0.80640 1.42691 1.29242 1.31783 1.37720 1.90885 1.26544 1.76558 1.59519 1.23282 0.96529 0.88299 0.91588 0.92749 0.95512 0.95054 0.89768 0.89280 0.88605 0.75945 0.74529 0.88836 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.47 13.96 21.45 0.30 -57.17 15 2 C 0.00 0.26 5.47 84.65 0.46 0.72 15 3 Si 0.94 41.59 27.47 68.60 1.88 43.47 15 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 15 6 H -0.24 -9.76 6.54 99.48 0.65 -9.11 15 7 C -0.52 -27.38 9.66 25.60 0.25 -27.13 15 8 H 0.04 2.19 7.99 -2.91 -0.02 2.17 15 9 C 0.00 -0.10 3.88 29.85 0.12 0.01 15 10 C -0.10 -3.34 3.76 -10.13 -0.04 -3.38 15 11 C 0.12 3.38 8.02 86.42 0.69 4.07 15 12 N -0.67 -20.28 3.62 -853.71 -3.09 -23.36 15 13 C 0.72 22.85 9.03 179.05 1.62 24.47 15 14 N -0.85 -17.94 8.88 -184.75 -1.64 -19.58 15 15 O -0.65 -26.35 17.91 -3.98 -0.07 -26.42 15 16 C 0.13 3.84 8.40 86.49 0.73 4.57 15 17 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15 18 H 0.03 1.09 7.20 -2.39 -0.02 1.07 15 19 H 0.03 1.21 7.31 -2.39 -0.02 1.19 15 20 H 0.08 3.05 8.13 -2.39 -0.02 3.03 15 21 H 0.09 2.30 8.14 -2.38 -0.02 2.28 15 22 H 0.10 2.57 7.92 -2.39 -0.02 2.55 15 23 H 0.41 6.65 8.44 -92.70 -0.78 5.87 15 24 H 0.42 7.29 8.93 -92.71 -0.83 6.47 15 25 H 0.09 2.60 8.10 -2.39 -0.02 2.58 15 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 Total: -1.00 -68.81 229.42 0.74 -68.07 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -0.47 Total: 11.66 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 3.83 Total: 3.33 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -4.43 Total: -100.12 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.07 Total: -26.42 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.88 Total: 43.47 kcal Total: -68.81 0.74 -68.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260952563.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.780 kcal (2) G-P(sol) polarization free energy of solvation -68.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds