Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.59090 * 2 1 4 4 H 1.07998 * 120.00156 * 355.20108 * 3 2 1 5 5 C 1.37876 * 119.99752 * 175.19593 * 3 2 1 6 6 N 1.31518 * 120.00340 * 188.29803 * 5 3 2 7 7 Si 1.86801 * 120.00162 * 8.29724 * 5 3 2 8 8 H 1.48503 * 109.47170 * 87.54515 * 7 5 3 9 9 H 1.48497 * 109.47532 * 207.54597 * 7 5 3 10 10 H 1.48507 * 109.46874 * 327.54625 * 7 5 3 11 11 C 1.52988 * 109.59212 * 239.54731 * 2 1 3 12 12 N 1.46012 * 110.04253 * 290.51697 * 11 2 1 13 13 C 1.33716 * 122.92651 * 341.84061 * 12 11 2 14 14 O 1.21274 * 118.62183 * 181.96947 * 13 12 11 15 15 C 1.50254 * 122.75028 * 1.68548 * 13 12 11 16 16 N 1.46895 * 109.98452 * 342.79980 * 15 13 12 17 17 H 1.09002 * 109.47095 * 292.15955 * 1 2 3 18 18 H 1.08996 * 109.47319 * 52.15937 * 1 2 3 19 19 H 1.09001 * 109.47119 * 172.15730 * 1 2 3 20 20 H 0.96997 * 120.00187 * 180.02562 * 6 5 3 21 21 H 1.09001 * 109.37305 * 50.69461 * 11 2 1 22 22 H 1.09001 * 109.37263 * 170.46094 * 11 2 1 23 23 H 0.96993 * 118.53544 * 161.85526 * 12 11 2 24 24 H 1.09009 * 109.38748 * 102.95539 * 15 13 12 25 25 H 1.09001 * 109.39084 * 222.64154 * 15 13 12 26 26 H 1.00899 * 111.00369 * 173.66564 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0353 1.4197 0.0000 4 1 1.3383 2.2410 -0.0782 5 6 3.3874 1.6702 0.1000 6 7 3.8177 2.9021 0.2643 7 14 4.6084 0.2598 0.0021 8 1 4.9597 0.0069 -1.4184 9 1 5.8353 0.6137 0.7600 10 1 4.0005 -0.9625 0.5869 11 6 2.0430 -0.7305 -1.2425 12 7 1.7579 -2.1586 -1.1367 13 6 1.4679 -2.7580 0.0229 14 8 1.2794 -3.9560 0.0264 15 6 1.3721 -2.0103 1.3227 16 7 2.0236 -0.6997 1.1972 17 1 -0.3633 0.3876 0.9518 18 1 -0.3634 0.6304 -0.8115 19 1 -0.3633 -1.0181 -0.1402 20 1 4.7690 3.0783 0.3343 21 1 1.5506 -0.3279 -2.1277 22 1 3.1196 -0.5839 -1.3294 23 1 1.7800 -2.6965 -1.9436 24 1 0.3228 -1.8693 1.5825 25 1 1.8635 -2.5849 2.1078 26 1 1.8794 -0.1433 2.0264 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966428.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = -43.307122 kcal Electronic energy + Delta-G solvation = -11901.856848 eV Core-core repulsion = 9786.908128 eV Total energy + Delta-G solvation = -2114.948720 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.42188 -38.52161 -34.99711 -34.37595 -31.96332 -28.31091 -26.60204 -26.46204 -22.62412 -19.99127 -18.60786 -17.95375 -17.30238 -17.02206 -16.33673 -15.65348 -15.36331 -14.87772 -14.36506 -14.10044 -13.65808 -13.31515 -12.83967 -12.39783 -12.22047 -12.06750 -11.65572 -11.29637 -10.98699 -10.68059 -9.97774 -8.88808 -8.28190 -6.40874 1.43911 1.53795 1.63024 1.87446 2.39322 2.53746 3.06050 3.50539 3.70543 4.15409 4.32108 4.45427 4.52857 4.62904 4.73572 4.79970 5.07383 5.36644 5.53084 5.79231 6.11890 6.19991 6.34903 6.68840 6.76275 7.22000 7.37078 8.84299 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.051886 B = 0.018983 C = 0.016754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.514663 B = 1474.616655 C = 1670.869439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.191 3.809 3 C -0.515 4.515 4 H 0.045 0.955 5 C 0.044 3.956 6 N -0.936 5.936 7 Si 0.921 3.079 8 H -0.296 1.296 9 H -0.325 1.325 10 H -0.176 1.176 11 C 0.118 3.882 12 N -0.707 5.707 13 C 0.524 3.476 14 O -0.604 6.604 15 C 0.037 3.963 16 N -0.681 5.681 17 H 0.055 0.945 18 H 0.056 0.944 19 H 0.048 0.952 20 H 0.265 0.735 21 H 0.092 0.908 22 H 0.045 0.955 23 H 0.401 0.599 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 -7.507 -0.510 8.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.101 3.899 3 C -0.553 4.553 4 H 0.063 0.937 5 C -0.157 4.157 6 N -0.574 5.574 7 Si 0.750 3.250 8 H -0.224 1.224 9 H -0.255 1.255 10 H -0.097 1.097 11 C -0.007 4.007 12 N -0.357 5.357 13 C 0.312 3.688 14 O -0.487 6.487 15 C -0.095 4.095 16 N -0.317 5.317 17 H 0.074 0.926 18 H 0.076 0.924 19 H 0.067 0.933 20 H 0.073 0.927 21 H 0.110 0.890 22 H 0.063 0.937 23 H 0.237 0.763 24 H 0.100 0.900 25 H 0.131 0.869 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.472 -8.121 -0.588 8.852 hybrid contribution 0.089 0.296 -0.257 0.402 sum -3.383 -7.825 -0.845 8.567 Atomic orbital electron populations 1.22221 0.96336 1.00248 1.02136 1.19104 0.91784 0.91645 0.87372 1.20866 0.92267 0.90268 1.51903 0.93659 1.25704 1.00502 0.97201 0.92279 1.70061 1.15512 1.22292 1.49507 0.86523 0.76453 0.85373 0.76636 1.22444 1.25501 1.09661 1.22044 0.99631 0.78119 1.00859 1.45686 1.69265 1.10936 1.09770 1.20522 0.74399 0.86983 0.86850 1.90675 1.53977 1.16373 1.87689 1.22047 1.00717 0.92389 0.94334 1.61816 1.58595 1.03774 1.07474 0.92632 0.92449 0.93341 0.92656 0.89028 0.93678 0.76338 0.90025 0.86882 0.82590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 7.59 71.98 0.55 -4.52 15 2 C 0.19 7.45 0.57 2.72 0.00 7.45 15 3 C -0.51 -25.53 8.66 25.60 0.22 -25.31 15 4 H 0.05 2.51 7.99 -2.91 -0.02 2.49 15 5 C 0.04 2.35 5.44 84.65 0.46 2.81 15 6 N -0.94 -54.71 13.96 21.45 0.30 -54.41 15 7 Si 0.92 42.10 23.82 68.60 1.63 43.74 15 8 H -0.30 -13.46 6.93 99.48 0.69 -12.77 15 9 H -0.33 -15.78 7.11 99.48 0.71 -15.07 15 10 H -0.18 -7.38 5.19 99.48 0.52 -6.86 15 11 C 0.12 4.28 5.54 86.47 0.48 4.76 15 12 N -0.71 -23.37 5.33 -466.08 -2.49 -25.85 15 13 C 0.52 18.63 6.94 87.68 0.61 19.24 15 14 O -0.60 -24.45 17.82 -3.01 -0.05 -24.50 15 15 C 0.04 1.16 6.06 85.42 0.52 1.67 15 16 N -0.68 -24.79 3.20 -478.03 -1.53 -26.32 15 17 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 18 H 0.06 1.93 8.13 -2.39 -0.02 1.91 15 19 H 0.05 1.48 6.08 -2.39 -0.01 1.47 15 20 H 0.26 14.83 8.31 -92.71 -0.77 14.06 15 21 H 0.09 3.02 8.12 -2.39 -0.02 3.00 15 22 H 0.05 1.82 3.33 -2.39 -0.01 1.81 15 23 H 0.40 11.47 8.84 -92.71 -0.82 10.65 15 24 H 0.08 2.28 6.94 -2.38 -0.02 2.27 15 25 H 0.11 3.26 8.14 -2.39 -0.02 3.24 15 26 H 0.35 12.54 8.70 -89.69 -0.78 11.76 15 Total: -1.00 -61.62 206.89 0.10 -61.51 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.60 Total: 19.73 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 2.84 Total: 6.10 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.72 Total: -106.59 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.63 Total: 43.74 kcal Total: -61.62 0.10 -61.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966428.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.208 kcal (2) G-P(sol) polarization free energy of solvation -61.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds