Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46768 * 2 1 4 4 C 1.52999 * 112.99491 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46623 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46866 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00270 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99834 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00496 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47141 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47494 * 119.99680 * 10 8 6 13 13 H 1.48505 * 109.47047 * 239.99860 * 10 8 6 14 14 C 1.54035 * 113.81444 * 311.82610 * 3 2 1 15 15 O 1.44451 * 85.42387 * 91.81124 * 14 3 2 16 16 C 1.44180 * 93.37956 * 24.08778 * 15 14 3 17 17 H 1.08999 * 109.47511 * 60.00032 * 1 2 3 18 18 H 1.08997 * 109.46838 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47223 * 300.00154 * 1 2 3 20 20 H 1.08999 * 109.46849 * 240.00727 * 2 1 3 21 21 H 1.08995 * 109.47063 * 119.99832 * 2 1 3 22 22 H 1.09000 * 109.47486 * 60.00130 * 4 3 2 23 23 H 1.09001 * 109.47362 * 299.99407 * 4 3 2 24 24 H 1.08993 * 109.46955 * 300.00075 * 5 4 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 5 4 3 26 26 H 0.96992 * 120.00032 * 180.02562 * 9 8 6 27 27 H 1.09005 * 113.86133 * 205.91068 * 14 3 2 28 28 H 1.09000 * 113.86684 * 337.62073 * 14 3 2 29 29 H 1.09002 * 113.85743 * 221.77308 * 16 15 14 30 30 H 1.08991 * 113.86626 * 90.06382 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5671 1.5367 -0.0006 5 6 3.9872 3.0080 -0.0012 6 6 5.4914 3.1008 -0.0012 7 1 6.0879 2.2004 -0.0004 8 6 6.1060 4.3349 -0.0012 9 7 5.3795 5.4313 -0.0017 10 14 7.9704 4.4500 -0.0019 11 1 8.5507 3.0830 -0.0018 12 1 8.4209 5.1794 -1.2144 13 1 8.4218 5.1790 1.2106 14 6 1.3612 2.3422 -1.0501 15 8 0.4263 2.6675 0.0019 16 6 1.3613 2.3422 1.0501 17 1 -0.3634 0.5138 -0.8900 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 1.8933 -0.5137 -0.8901 21 1 1.8933 -0.5138 0.8900 22 1 3.9610 1.0464 -0.8908 23 1 3.9617 1.0462 0.8892 24 1 3.5926 3.4981 -0.8912 25 1 3.5933 3.4987 0.8888 26 1 5.8119 6.2995 -0.0020 27 1 1.9740 3.1845 -1.3714 28 1 0.9185 1.7932 -1.8812 29 1 0.9185 1.7932 1.8811 30 1 1.9740 3.1844 1.3715 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986486.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -51.750932 kcal Electronic energy + Delta-G solvation = -11571.622619 eV Core-core repulsion = 9559.848092 eV Total energy + Delta-G solvation = -2011.774528 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.86704 -35.89871 -34.52310 -32.80649 -29.03005 -27.52576 -26.16658 -24.92691 -22.40124 -19.21363 -18.65124 -17.13164 -17.02572 -16.48508 -16.20714 -15.46149 -14.64748 -14.39612 -13.82657 -13.43030 -13.26088 -12.96284 -12.92241 -12.54324 -12.45678 -12.20166 -11.64427 -11.47796 -11.30455 -11.04720 -10.85613 -10.50629 -10.23804 -8.19601 -6.30068 1.39239 1.39745 1.52714 2.40683 2.87299 3.13352 3.33241 3.89346 4.14561 4.27733 4.45576 4.53105 4.59994 4.74023 4.84107 4.86182 4.86357 5.02059 5.17002 5.21292 5.33925 5.36079 5.44448 5.53456 5.56714 5.78599 5.87678 6.26738 6.87881 7.38917 8.91856 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.078352 B = 0.009534 C = 0.008920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.274322 B = 2936.050528 C = 3138.100682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.118 4.118 4 C -0.093 4.093 5 C 0.021 3.979 6 C -0.542 4.542 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.035 3.965 15 O -0.396 6.396 16 C 0.035 3.965 17 H 0.049 0.951 18 H 0.067 0.933 19 H 0.049 0.951 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.056 0.944 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -9.669 -0.010 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.118 4.118 4 C -0.131 4.131 5 C -0.016 4.016 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.041 4.041 15 O -0.315 6.315 16 C -0.041 4.041 17 H 0.069 0.931 18 H 0.086 0.914 19 H 0.068 0.932 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.692 -9.406 -0.010 11.544 hybrid contribution 1.173 0.703 0.003 1.367 sum -5.519 -8.704 -0.007 10.306 Atomic orbital electron populations 1.21754 0.94663 1.01481 1.02063 1.21272 0.96541 0.92089 1.03164 1.23655 0.95804 0.97333 0.95035 1.21420 0.93051 0.97563 1.01029 1.19194 0.94693 0.92545 0.95163 1.21771 0.93649 0.92447 1.50153 0.92303 1.25960 1.03446 0.95569 0.94894 1.70106 1.37246 0.98086 1.51878 0.85437 0.79608 0.78517 0.77715 1.18571 1.20475 1.20485 1.24248 0.89811 0.97415 0.92638 1.89568 1.33387 1.90868 1.17679 1.24190 0.89836 0.97395 0.92679 0.93147 0.91407 0.93161 0.90562 0.90569 0.92484 0.92488 0.98394 0.98412 0.92878 0.91715 0.87706 0.87761 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.63 71.98 0.62 -2.67 16 2 C -0.09 -2.37 5.65 30.60 0.17 -2.20 16 3 C -0.12 -3.93 1.38 -51.48 -0.07 -4.00 16 4 C -0.09 -3.72 4.92 30.60 0.15 -3.57 16 5 C 0.02 1.07 4.20 29.85 0.13 1.20 16 6 C -0.54 -30.75 9.11 25.60 0.23 -30.51 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 9 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 10 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 C 0.04 1.23 7.53 72.30 0.54 1.77 16 15 O -0.40 -14.52 10.87 -148.98 -1.62 -16.14 16 16 C 0.04 1.24 7.52 72.30 0.54 1.78 16 17 H 0.05 1.23 6.53 -2.39 -0.02 1.22 16 18 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 19 H 0.05 1.23 6.53 -2.39 -0.02 1.21 16 20 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 21 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.00 -0.12 6.07 -2.39 -0.01 -0.13 16 25 H 0.00 -0.13 6.07 -2.39 -0.01 -0.14 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.06 2.65 5.83 -2.38 -0.01 2.63 16 28 H 0.10 3.05 7.33 -2.39 -0.02 3.03 16 29 H 0.10 3.04 7.33 -2.39 -0.02 3.02 16 30 H 0.06 2.63 5.83 -2.39 -0.01 2.61 16 Total: -1.00 -63.25 237.70 4.58 -58.66 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.11 Total: 5.59 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 2.78 Total: -37.80 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.28 Total: -56.69 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.62 Total: -16.14 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.25 4.58 -58.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986486.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.914 kcal (2) G-P(sol) polarization free energy of solvation -63.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds