Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.71928 * 2 1 4 4 C 1.52985 * 109.59347 * 239.61787 * 2 1 3 5 5 N 1.46006 * 109.94811 * 290.46553 * 4 2 1 6 6 C 1.33721 * 122.92701 * 341.91604 * 5 4 2 7 7 O 1.21279 * 118.62269 * 181.66929 * 6 5 4 8 8 C 1.50253 * 122.75146 * 1.64606 * 6 5 4 9 9 H 1.09003 * 109.38427 * 102.97898 * 8 6 5 10 10 C 1.50704 * 109.38478 * 222.76540 * 8 6 5 11 11 H 1.07995 * 119.99451 * 119.99930 * 10 8 6 12 12 C 1.37873 * 120.00316 * 300.00331 * 10 8 6 13 13 N 1.31519 * 119.99924 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00146 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47098 * 89.99729 * 14 12 10 16 16 H 1.48495 * 109.47002 * 209.99462 * 14 12 10 17 17 H 1.48499 * 109.46955 * 329.99967 * 14 12 10 18 18 N 1.46904 * 109.97816 * 342.81942 * 8 6 5 19 19 H 1.08993 * 109.47921 * 180.37807 * 1 2 3 20 20 H 1.09008 * 109.47230 * 300.38251 * 1 2 3 21 21 H 1.09010 * 109.47159 * 60.38022 * 1 2 3 22 22 H 1.09002 * 109.37610 * 170.34558 * 4 2 1 23 23 H 1.08999 * 109.37155 * 50.58045 * 4 2 1 24 24 H 0.96999 * 118.53698 * 161.90030 * 5 4 2 25 25 H 0.97001 * 120.00270 * 180.02562 * 13 12 10 26 26 H 1.00901 * 110.99464 * 286.93023 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0260 0.0000 4 6 2.0430 -0.7289 -1.2433 5 7 1.7579 -2.1569 -1.1367 6 6 1.4673 -2.7555 0.0233 7 8 1.2735 -3.9527 0.0267 8 6 1.3714 -2.0070 1.3226 9 1 0.3222 -1.8657 1.5821 10 6 2.0528 -2.7998 2.4080 11 1 2.8896 -2.3751 2.9425 12 6 1.6080 -4.0673 2.7187 13 7 0.5886 -4.5843 2.0680 14 14 2.4530 -5.0503 4.0637 15 1 1.7986 -4.7703 5.3670 16 1 2.3476 -6.4996 3.7581 17 1 3.8846 -4.6622 4.1352 18 7 2.0233 -0.6966 1.1962 19 1 -0.3635 -1.0275 0.0068 20 1 -0.3634 0.5198 0.8866 21 1 -0.3634 0.5080 -0.8934 22 1 3.1193 -0.5806 -1.3312 23 1 1.5491 -0.3267 -2.1278 24 1 1.7802 -2.6954 -1.9432 25 1 0.2754 -5.4759 2.2868 26 1 3.0273 -0.7932 1.1707 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046349.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -13.662010 kcal Electronic energy + Delta-G solvation = -11815.305591 eV Core-core repulsion = 9701.642380 eV Total energy + Delta-G solvation = -2113.663211 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.29076 -35.86288 -33.44625 -31.71528 -29.92482 -26.74492 -25.53073 -22.75645 -21.05483 -17.90766 -17.00006 -15.99115 -15.24703 -14.33002 -14.25252 -14.11366 -13.31396 -12.98508 -12.33700 -11.90293 -11.48808 -11.32644 -10.95633 -10.82275 -10.60927 -10.47331 -9.77545 -9.29543 -8.86337 -8.18881 -7.98135 -7.21027 -5.83477 -3.93511 3.38660 3.44364 3.47412 4.24152 4.31227 4.54957 5.04651 5.38116 5.43378 5.47844 5.71350 5.85258 6.09882 6.15742 6.42716 6.45897 6.72046 7.19048 7.53434 7.89852 7.99077 8.17946 8.45504 8.60492 9.02521 9.67173 9.85713 11.17391 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.062617 B = 0.015041 C = 0.013855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.055083 B = 1861.091493 C = 2020.453203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.084 0.916 4 C 0.087 3.913 5 N -0.755 5.755 6 C 0.470 3.530 7 O -0.488 6.488 8 C 0.215 3.785 9 H 0.069 0.931 10 C -0.546 4.546 11 H 0.066 0.934 12 C 0.074 3.926 13 N -0.822 5.822 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.275 1.275 18 N -0.672 5.672 19 H 0.062 0.938 20 H 0.062 0.938 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.373 0.627 25 H 0.256 0.744 26 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 7.789 -5.143 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.045 4.045 3 H 0.102 0.898 4 C -0.041 4.041 5 N -0.413 5.413 6 C 0.256 3.744 7 O -0.356 6.356 8 C 0.104 3.896 9 H 0.087 0.913 10 C -0.584 4.584 11 H 0.084 0.916 12 C -0.135 4.135 13 N -0.455 5.455 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.200 1.200 18 N -0.303 5.303 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.207 0.793 25 H 0.067 0.933 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.765 7.365 -4.467 8.648 hybrid contribution 0.945 -1.218 -0.631 1.666 sum 1.710 6.147 -5.098 8.167 Atomic orbital electron populations 1.21857 0.94545 1.02771 1.01057 1.21829 0.96230 0.97740 0.88748 0.89805 1.21994 0.99041 0.83260 0.99796 1.46397 1.75845 1.08519 1.10569 1.23129 0.75540 0.89920 0.85841 1.90760 1.45294 1.14663 1.84890 1.19313 0.98010 0.82886 0.89416 0.91324 1.20635 1.18364 1.00482 1.18890 0.91610 1.24953 0.95235 0.97419 0.95895 1.70224 1.23489 1.15533 1.36251 0.86541 0.79916 0.79196 0.81903 1.20625 1.21382 1.19991 1.61134 1.10580 1.22525 1.36039 0.91930 0.91896 0.93173 0.93499 0.92321 0.79332 0.93345 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.58 37.16 0.32 -2.07 15 2 C 0.07 1.08 3.74 -67.69 -0.25 0.83 15 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 4 C 0.09 1.35 6.67 -4.32 -0.03 1.32 15 5 N -0.75 -15.09 5.40 -61.07 -0.33 -15.42 15 6 C 0.47 12.00 6.51 -11.67 -0.08 11.93 15 7 O -0.49 -14.69 13.80 5.56 0.08 -14.61 15 8 C 0.21 5.49 2.11 -70.23 -0.15 5.34 15 9 H 0.07 1.91 6.76 -51.93 -0.35 1.56 15 10 C -0.55 -15.49 8.62 -34.44 -0.30 -15.79 15 11 H 0.07 1.83 7.81 -52.49 -0.41 1.42 15 12 C 0.07 2.17 4.97 -17.82 -0.09 2.08 15 13 N -0.82 -25.23 10.29 55.43 0.57 -24.66 15 14 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 15 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 18 N -0.67 -13.90 6.55 -102.38 -0.67 -14.57 15 19 H 0.06 1.24 5.72 -51.93 -0.30 0.94 15 20 H 0.06 1.02 8.14 -51.92 -0.42 0.60 15 21 H 0.05 0.67 8.14 -51.92 -0.42 0.25 15 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.06 0.76 8.12 -51.93 -0.42 0.34 15 24 H 0.37 6.96 8.84 -40.82 -0.36 6.59 15 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 26 H 0.34 6.76 8.56 -39.29 -0.34 6.42 15 LS Contribution 214.79 15.07 3.24 3.24 Total: -1.00 -32.55 214.79 -5.71 -38.26 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.00 Total: 6.87 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.57 Total: 3.64 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.43 Total: -54.64 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.08 Total: -14.61 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -32.55 -5.71 -38.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046349.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.598 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds