Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.71928 * 2 1 4 4 C 1.52985 * 109.59347 * 239.61787 * 2 1 3 5 5 N 1.46006 * 109.94811 * 290.46553 * 4 2 1 6 6 C 1.33721 * 122.92701 * 341.91604 * 5 4 2 7 7 O 1.21279 * 118.62269 * 181.66929 * 6 5 4 8 8 C 1.50253 * 122.75146 * 1.64606 * 6 5 4 9 9 H 1.09003 * 109.38427 * 102.97898 * 8 6 5 10 10 C 1.50704 * 109.38478 * 222.76540 * 8 6 5 11 11 H 1.07995 * 119.99451 * 119.99930 * 10 8 6 12 12 C 1.37873 * 120.00316 * 300.00331 * 10 8 6 13 13 N 1.31519 * 119.99924 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00146 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47098 * 89.99729 * 14 12 10 16 16 H 1.48495 * 109.47002 * 209.99462 * 14 12 10 17 17 H 1.48499 * 109.46955 * 329.99967 * 14 12 10 18 18 N 1.46904 * 109.97816 * 342.81942 * 8 6 5 19 19 H 1.08993 * 109.47921 * 180.37807 * 1 2 3 20 20 H 1.09008 * 109.47230 * 300.38251 * 1 2 3 21 21 H 1.09010 * 109.47159 * 60.38022 * 1 2 3 22 22 H 1.09002 * 109.37610 * 170.34558 * 4 2 1 23 23 H 1.08999 * 109.37155 * 50.58045 * 4 2 1 24 24 H 0.96999 * 118.53698 * 161.90030 * 5 4 2 25 25 H 0.97001 * 120.00270 * 180.02562 * 13 12 10 26 26 H 1.00901 * 110.99464 * 286.93023 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0260 0.0000 4 6 2.0430 -0.7289 -1.2433 5 7 1.7579 -2.1569 -1.1367 6 6 1.4673 -2.7555 0.0233 7 8 1.2735 -3.9527 0.0267 8 6 1.3714 -2.0070 1.3226 9 1 0.3222 -1.8657 1.5821 10 6 2.0528 -2.7998 2.4080 11 1 2.8896 -2.3751 2.9425 12 6 1.6080 -4.0673 2.7187 13 7 0.5886 -4.5843 2.0680 14 14 2.4530 -5.0503 4.0637 15 1 1.7986 -4.7703 5.3670 16 1 2.3476 -6.4996 3.7581 17 1 3.8846 -4.6622 4.1352 18 7 2.0233 -0.6966 1.1962 19 1 -0.3635 -1.0275 0.0068 20 1 -0.3634 0.5198 0.8866 21 1 -0.3634 0.5080 -0.8934 22 1 3.1193 -0.5806 -1.3312 23 1 1.5491 -0.3267 -2.1278 24 1 1.7802 -2.6954 -1.9432 25 1 0.2754 -5.4759 2.2868 26 1 3.0273 -0.7932 1.1707 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046349.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -41.224952 kcal Electronic energy + Delta-G solvation = -11816.500810 eV Core-core repulsion = 9701.642380 eV Total energy + Delta-G solvation = -2114.858430 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.03662 -37.67191 -35.36021 -33.62889 -31.62338 -28.40857 -27.26185 -24.67554 -22.68991 -19.56485 -18.91392 -17.82145 -17.00968 -16.31089 -15.93273 -15.73162 -15.11711 -14.43386 -14.29046 -13.64897 -13.18130 -12.94578 -12.72229 -12.50089 -12.34714 -12.20574 -11.56607 -11.34482 -10.85181 -10.32374 -9.67360 -8.93898 -8.00994 -6.17068 1.40935 1.43648 1.53057 2.26615 2.50661 2.70082 3.29227 3.54970 4.05270 4.11141 4.44797 4.51883 4.69661 4.81780 4.93965 5.12469 5.25852 5.37511 5.61880 5.87484 6.24175 6.38779 6.61668 6.76632 6.98198 7.48131 7.95287 8.99332 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.062617 B = 0.015041 C = 0.013855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.055083 B = 1861.091493 C = 2020.453203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.060 3.940 3 H 0.127 0.873 4 C 0.082 3.918 5 N -0.743 5.743 6 C 0.469 3.531 7 O -0.546 6.546 8 C 0.220 3.780 9 H 0.036 0.964 10 C -0.563 4.563 11 H 0.066 0.934 12 C 0.019 3.981 13 N -0.857 5.857 14 Si 0.962 3.038 15 H -0.268 1.268 16 H -0.292 1.292 17 H -0.265 1.265 18 N -0.674 5.674 19 H 0.020 0.980 20 H 0.059 0.941 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.100 0.900 24 H 0.383 0.617 25 H 0.251 0.749 26 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 9.556 -5.872 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 H 0.145 0.855 4 C -0.044 4.044 5 N -0.400 5.400 6 C 0.254 3.746 7 O -0.419 6.419 8 C 0.107 3.893 9 H 0.053 0.947 10 C -0.601 4.601 11 H 0.085 0.915 12 C -0.187 4.187 13 N -0.491 5.491 14 Si 0.787 3.213 15 H -0.194 1.194 16 H -0.218 1.218 17 H -0.190 1.190 18 N -0.305 5.305 19 H 0.039 0.961 20 H 0.078 0.922 21 H 0.106 0.894 22 H 0.089 0.911 23 H 0.118 0.882 24 H 0.218 0.782 25 H 0.060 0.940 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.935 9.212 -5.229 10.767 hybrid contribution 0.583 -1.613 -0.489 1.783 sum 2.517 7.599 -5.717 9.837 Atomic orbital electron populations 1.21844 0.94802 1.00491 1.02808 1.22128 0.96092 0.99366 0.87380 0.85513 1.22319 1.01042 0.80065 1.00928 1.46089 1.73924 1.10764 1.09180 1.22901 0.75177 0.89181 0.87294 1.90725 1.48114 1.16926 1.86103 1.18933 0.96304 0.84908 0.89126 0.94652 1.21057 1.18312 1.00976 1.19778 0.91545 1.25837 0.95922 0.98780 0.98140 1.70419 1.25201 1.15472 1.38024 0.85519 0.79275 0.77180 0.79339 1.19371 1.21780 1.18957 1.61008 1.10573 1.19877 1.39032 0.96107 0.92233 0.89448 0.91056 0.88217 0.78242 0.93977 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.58 71.98 0.62 -3.76 15 2 C 0.06 1.78 3.74 44.90 0.17 1.95 15 3 H 0.13 2.78 8.14 -2.39 -0.02 2.76 15 4 C 0.08 2.21 6.67 86.47 0.58 2.78 15 5 N -0.74 -28.42 5.40 -466.09 -2.52 -30.94 15 6 C 0.47 24.14 6.51 87.68 0.57 24.71 15 7 O -0.55 -33.83 13.80 -3.03 -0.04 -33.87 15 8 C 0.22 11.36 2.11 43.28 0.09 11.45 15 9 H 0.04 2.07 6.76 -2.39 -0.02 2.06 15 10 C -0.56 -32.43 8.62 25.60 0.22 -32.21 15 11 H 0.07 3.70 7.81 -2.91 -0.02 3.67 15 12 C 0.02 1.12 4.97 84.65 0.42 1.54 15 13 N -0.86 -54.46 10.29 21.45 0.22 -54.24 15 14 Si 0.96 46.39 29.54 68.60 2.03 48.41 15 15 H -0.27 -12.31 7.11 99.48 0.71 -11.61 15 16 H -0.29 -14.12 7.11 99.48 0.71 -13.41 15 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 18 N -0.67 -26.86 6.55 -477.82 -3.13 -29.99 15 19 H 0.02 0.80 5.72 -2.39 -0.01 0.78 15 20 H 0.06 1.84 8.14 -2.38 -0.02 1.82 15 21 H 0.09 2.01 8.14 -2.38 -0.02 1.99 15 22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.10 2.00 8.12 -2.39 -0.02 1.98 15 24 H 0.38 13.62 8.84 -92.71 -0.82 12.80 15 25 H 0.25 15.38 8.31 -92.71 -0.77 14.61 15 26 H 0.34 13.01 8.56 -89.69 -0.77 12.24 15 Total: -1.00 -73.15 214.79 -1.16 -74.32 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.39 Total: 19.84 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 2.67 Total: 6.47 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -5.43 Total: -115.17 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.04 Total: -33.87 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.15 -1.16 -74.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046349.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.094 kcal (2) G-P(sol) polarization free energy of solvation -73.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds