Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.72013 * 2 1 4 4 C 1.52985 * 109.59411 * 120.37895 * 2 1 3 5 5 N 1.46006 * 109.94811 * 170.00944 * 4 2 1 6 6 C 1.33721 * 122.92701 * 341.91604 * 5 4 2 7 7 O 1.21279 * 118.62269 * 181.66929 * 6 5 4 8 8 C 1.50251 * 122.75299 * 1.68926 * 6 5 4 9 9 H 1.08992 * 109.38620 * 222.72104 * 8 6 5 10 10 C 1.50697 * 109.38591 * 102.93055 * 8 6 5 11 11 H 1.08001 * 119.99997 * 240.00477 * 10 8 6 12 12 C 1.37879 * 120.00306 * 60.00140 * 10 8 6 13 13 N 1.31513 * 119.99359 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00509 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47177 * 59.99524 * 14 12 10 16 16 H 1.48501 * 109.47179 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46594 * 299.99807 * 14 12 10 18 18 N 1.46899 * 109.97689 * 342.77802 * 8 6 5 19 19 H 1.08998 * 109.46885 * 299.62407 * 1 2 3 20 20 H 1.09007 * 109.46803 * 59.62122 * 1 2 3 21 21 H 1.09000 * 109.46718 * 179.61950 * 1 2 3 22 22 H 1.09002 * 109.37610 * 49.88949 * 4 2 1 23 23 H 1.08999 * 109.37155 * 290.12437 * 4 2 1 24 24 H 0.96999 * 118.53698 * 161.90030 * 5 4 2 25 25 H 0.97006 * 119.99994 * 179.97438 * 13 12 10 26 26 H 1.00900 * 111.00274 * 286.92616 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0260 0.0000 4 6 2.0430 -0.7289 1.2434 5 7 3.4835 -0.9424 1.1368 6 6 4.1450 -0.8708 -0.0231 7 8 5.3374 -1.0922 -0.0265 8 6 3.4731 -0.5270 -1.3223 9 1 3.8467 -1.1838 -2.1077 10 6 3.7786 0.9046 -1.6801 11 1 2.9743 1.6165 -1.7931 12 6 5.0850 1.3058 -1.8630 13 7 6.0644 0.4391 -1.7247 14 14 5.4639 3.0806 -2.3057 15 1 4.9602 3.9765 -1.2339 16 1 6.9321 3.2530 -2.4465 17 1 4.8005 3.4228 -3.5894 18 7 2.0196 -0.6985 -1.1963 19 1 -0.3633 0.5080 0.8933 20 1 -0.3633 0.5197 -0.8866 21 1 -0.3633 -1.0277 -0.0068 22 1 1.5402 -1.6920 1.3312 23 1 1.8310 -0.1282 2.1278 24 1 3.9828 -1.1450 1.9433 25 1 6.9836 0.7211 -1.8538 26 1 1.7716 -1.6763 -1.1716 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046351.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = -24.733200 kcal Electronic energy + Delta-G solvation = -11720.933510 eV Core-core repulsion = 9606.790216 eV Total energy + Delta-G solvation = -2114.143294 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.11433 -35.89076 -33.37099 -31.98062 -30.49577 -26.16533 -25.38428 -22.76826 -21.14586 -18.81674 -16.15699 -15.94385 -15.39776 -14.55786 -14.34726 -13.95909 -13.39867 -12.78652 -12.24992 -12.15230 -11.56386 -11.31855 -11.05157 -10.76214 -10.71585 -10.33625 -9.89403 -9.34953 -8.96663 -8.44988 -7.99073 -7.19868 -5.87167 -4.04471 3.34847 3.39577 3.41309 4.21985 4.34183 4.47706 5.05406 5.27243 5.38048 5.72647 5.75704 5.87544 6.03176 6.13448 6.36414 6.52945 6.68380 7.10027 7.68230 7.85052 7.98012 7.99431 8.51320 8.55081 8.98182 9.57918 9.77892 11.09084 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.045106 B = 0.017047 C = 0.013976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.606296 B = 1642.110724 C = 2002.901908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.070 3.930 3 H 0.097 0.903 4 C 0.090 3.910 5 N -0.750 5.750 6 C 0.478 3.522 7 O -0.509 6.509 8 C 0.213 3.787 9 H 0.066 0.934 10 C -0.525 4.525 11 H 0.069 0.931 12 C 0.060 3.940 13 N -0.830 5.830 14 Si 0.895 3.105 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.275 1.275 18 N -0.670 5.670 19 H 0.052 0.948 20 H 0.064 0.936 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.375 0.625 25 H 0.260 0.740 26 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.878 -1.147 4.614 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.041 4.041 3 H 0.115 0.885 4 C -0.038 4.038 5 N -0.407 5.407 6 C 0.265 3.735 7 O -0.379 6.379 8 C 0.102 3.898 9 H 0.084 0.916 10 C -0.563 4.563 11 H 0.087 0.913 12 C -0.148 4.148 13 N -0.464 5.464 14 Si 0.722 3.278 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.200 1.200 18 N -0.299 5.299 19 H 0.071 0.929 20 H 0.084 0.916 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.208 0.792 25 H 0.070 0.930 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.233 -0.738 3.900 9.140 hybrid contribution 0.779 0.371 1.087 1.388 sum -7.455 -0.368 4.987 8.977 Atomic orbital electron populations 1.21712 0.94700 1.01355 1.01637 1.21779 0.94476 1.00211 0.87619 0.88526 1.21992 0.82499 0.99091 1.00176 1.46043 1.08053 1.76121 1.10495 1.22613 0.88836 0.75140 0.86913 1.90687 1.14949 1.46095 1.86199 1.19351 0.81038 0.99733 0.89671 0.91597 1.20627 0.92335 0.93167 1.50211 0.91278 1.25177 0.96571 0.97711 0.95364 1.70282 0.99308 1.33173 1.43622 0.86630 0.77132 0.85015 0.79036 1.20422 1.21321 1.19993 1.60975 1.15899 1.15141 1.37907 0.92911 0.91646 0.93209 0.93605 0.92380 0.79156 0.92953 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.51 37.16 0.35 -1.47 15 2 C 0.07 1.24 2.97 -67.70 -0.20 1.04 15 3 H 0.10 1.98 6.86 -51.93 -0.36 1.63 15 4 C 0.09 1.46 6.62 -4.32 -0.03 1.44 15 5 N -0.75 -15.44 5.52 -61.07 -0.34 -15.77 15 6 C 0.48 12.33 6.86 -11.67 -0.08 12.25 15 7 O -0.51 -15.27 15.05 5.56 0.08 -15.19 15 8 C 0.21 5.47 2.96 -70.24 -0.21 5.26 15 9 H 0.07 1.85 8.14 -51.93 -0.42 1.43 15 10 C -0.53 -14.64 7.82 -34.44 -0.27 -14.91 15 11 H 0.07 1.90 7.39 -52.49 -0.39 1.51 15 12 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 13 N -0.83 -25.45 10.52 55.43 0.58 -24.87 15 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 18 N -0.67 -13.71 6.30 -102.40 -0.64 -14.36 15 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.06 0.91 8.14 -51.92 -0.42 0.49 15 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.05 0.66 8.11 -51.93 -0.42 0.24 15 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.37 7.16 8.84 -40.82 -0.36 6.80 15 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 26 H 0.32 5.82 8.78 -39.29 -0.34 5.48 15 LS Contribution 219.27 15.07 3.30 3.30 Total: -1.00 -32.54 219.27 -5.68 -38.22 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.12 Total: 6.58 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.53 Total: 5.23 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.40 Total: -54.99 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.08 Total: -15.19 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -32.54 -5.68 -38.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046351.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.488 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds