Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.72013 * 2 1 4 4 C 1.52985 * 109.59411 * 120.37895 * 2 1 3 5 5 N 1.46006 * 109.94811 * 170.00944 * 4 2 1 6 6 C 1.33721 * 122.92701 * 341.91604 * 5 4 2 7 7 O 1.21279 * 118.62269 * 181.66929 * 6 5 4 8 8 C 1.50251 * 122.75299 * 1.68926 * 6 5 4 9 9 H 1.08992 * 109.38620 * 222.72104 * 8 6 5 10 10 C 1.50697 * 109.38591 * 102.93055 * 8 6 5 11 11 H 1.08001 * 119.99997 * 240.00477 * 10 8 6 12 12 C 1.37879 * 120.00306 * 60.00140 * 10 8 6 13 13 N 1.31513 * 119.99359 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00509 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47177 * 59.99524 * 14 12 10 16 16 H 1.48501 * 109.47179 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46594 * 299.99807 * 14 12 10 18 18 N 1.46899 * 109.97689 * 342.77802 * 8 6 5 19 19 H 1.08998 * 109.46885 * 299.62407 * 1 2 3 20 20 H 1.09007 * 109.46803 * 59.62122 * 1 2 3 21 21 H 1.09000 * 109.46718 * 179.61950 * 1 2 3 22 22 H 1.09002 * 109.37610 * 49.88949 * 4 2 1 23 23 H 1.08999 * 109.37155 * 290.12437 * 4 2 1 24 24 H 0.96999 * 118.53698 * 161.90030 * 5 4 2 25 25 H 0.97006 * 119.99994 * 179.97438 * 13 12 10 26 26 H 1.00900 * 111.00274 * 286.92616 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0260 0.0000 4 6 2.0430 -0.7289 1.2434 5 7 3.4835 -0.9424 1.1368 6 6 4.1450 -0.8708 -0.0231 7 8 5.3374 -1.0922 -0.0265 8 6 3.4731 -0.5270 -1.3223 9 1 3.8467 -1.1838 -2.1077 10 6 3.7786 0.9046 -1.6801 11 1 2.9743 1.6165 -1.7931 12 6 5.0850 1.3058 -1.8630 13 7 6.0644 0.4391 -1.7247 14 14 5.4639 3.0806 -2.3057 15 1 4.9602 3.9765 -1.2339 16 1 6.9321 3.2530 -2.4465 17 1 4.8005 3.4228 -3.5894 18 7 2.0196 -0.6985 -1.1963 19 1 -0.3633 0.5080 0.8933 20 1 -0.3633 0.5197 -0.8866 21 1 -0.3633 -1.0277 -0.0068 22 1 1.5402 -1.6920 1.3312 23 1 1.8310 -0.1282 2.1278 24 1 3.9828 -1.1450 1.9433 25 1 6.9836 0.7211 -1.8538 26 1 1.7716 -1.6763 -1.1716 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046351.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = -52.106758 kcal Electronic energy + Delta-G solvation = -11722.120516 eV Core-core repulsion = 9606.790216 eV Total energy + Delta-G solvation = -2115.330301 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.92048 -37.70248 -35.31846 -33.85411 -32.16173 -28.08941 -26.81383 -24.74596 -22.69637 -20.66198 -18.05615 -17.79166 -17.15668 -16.50552 -16.05461 -15.62319 -15.19222 -14.49807 -13.91593 -13.69527 -13.30070 -12.84471 -12.75122 -12.53256 -12.49188 -11.87189 -11.71328 -11.42573 -10.91335 -10.60669 -9.72726 -8.95501 -8.03883 -6.27917 1.39116 1.42312 1.50217 2.23368 2.42873 2.68196 3.19249 3.52388 3.94606 4.36504 4.47689 4.51442 4.73194 4.85757 4.98712 5.12200 5.34009 5.45557 5.64272 5.95096 6.11733 6.28655 6.58058 6.81577 6.91917 7.38883 7.84605 8.91592 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.045106 B = 0.017047 C = 0.013976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.606296 B = 1642.110724 C = 2002.901908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.065 3.935 3 H 0.065 0.935 4 C 0.085 3.915 5 N -0.740 5.740 6 C 0.476 3.524 7 O -0.563 6.563 8 C 0.213 3.787 9 H 0.028 0.972 10 C -0.532 4.532 11 H 0.070 0.930 12 C 0.004 3.996 13 N -0.870 5.870 14 Si 0.963 3.037 15 H -0.270 1.270 16 H -0.289 1.289 17 H -0.263 1.263 18 N -0.669 5.669 19 H 0.080 0.920 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.385 0.615 25 H 0.255 0.745 26 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 -0.483 5.704 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.045 4.045 3 H 0.083 0.917 4 C -0.040 4.040 5 N -0.395 5.395 6 C 0.262 3.738 7 O -0.438 6.438 8 C 0.101 3.899 9 H 0.046 0.954 10 C -0.571 4.571 11 H 0.088 0.912 12 C -0.200 4.200 13 N -0.505 5.505 14 Si 0.787 3.213 15 H -0.195 1.195 16 H -0.214 1.214 17 H -0.187 1.187 18 N -0.299 5.299 19 H 0.099 0.901 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.220 0.780 25 H 0.064 0.936 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.468 -0.074 5.025 11.611 hybrid contribution 1.324 0.115 0.791 1.547 sum -9.144 0.040 5.816 10.837 Atomic orbital electron populations 1.21629 0.90779 1.03020 1.02764 1.21905 0.97422 0.98211 0.87006 0.91693 1.22307 0.79597 1.01350 1.00738 1.45837 1.10094 1.74342 1.09233 1.22498 0.88196 0.74752 0.88337 1.90654 1.17157 1.48716 1.87269 1.19041 0.84062 0.97885 0.88943 0.95396 1.20939 0.92324 0.94243 1.49566 0.91232 1.26063 0.96534 1.02090 0.95359 1.70498 0.99314 1.35300 1.45344 0.85552 0.76746 0.79720 0.79266 1.19519 1.21446 1.18747 1.60864 1.12428 1.16514 1.40132 0.90084 0.92343 0.91208 0.90196 0.88995 0.78037 0.93596 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 9.51 71.98 0.68 -2.13 15 2 C 0.07 2.13 2.97 44.90 0.13 2.27 15 3 H 0.06 2.56 6.86 -2.39 -0.02 2.55 15 4 C 0.09 2.46 6.62 86.47 0.57 3.03 15 5 N -0.74 -29.27 5.52 -466.09 -2.57 -31.84 15 6 C 0.48 24.78 6.86 87.68 0.60 25.38 15 7 O -0.56 -34.86 15.05 -3.03 -0.05 -34.91 15 8 C 0.21 11.12 2.96 43.28 0.13 11.25 15 9 H 0.03 1.66 8.14 -2.39 -0.02 1.64 15 10 C -0.53 -30.07 7.82 25.60 0.20 -29.87 15 11 H 0.07 3.82 7.39 -2.91 -0.02 3.80 15 12 C 0.00 0.21 5.30 84.66 0.45 0.66 15 13 N -0.87 -55.05 10.52 21.45 0.23 -54.82 15 14 Si 0.96 45.37 29.54 68.60 2.03 47.39 15 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 17 H -0.26 -11.78 7.11 99.48 0.71 -11.07 15 18 N -0.67 -26.67 6.30 -477.89 -3.01 -29.68 15 19 H 0.08 1.43 8.14 -2.39 -0.02 1.41 15 20 H 0.06 1.43 8.14 -2.38 -0.02 1.41 15 21 H 0.07 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.08 1.87 8.11 -2.39 -0.02 1.85 15 23 H 0.09 2.13 8.14 -2.39 -0.02 2.12 15 24 H 0.39 14.07 8.84 -92.71 -0.82 13.25 15 25 H 0.26 15.59 8.31 -92.70 -0.77 14.82 15 26 H 0.33 11.61 8.78 -89.69 -0.79 10.82 15 Total: -1.00 -72.73 219.27 -1.02 -73.74 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.41 Total: 19.52 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 2.77 Total: 10.59 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -5.36 Total: -116.35 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.05 Total: -34.91 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.73 -1.02 -73.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046351.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.636 kcal (2) G-P(sol) polarization free energy of solvation -72.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds