Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.21462 * 2 1 4 4 C 1.52985 * 109.17871 * 119.36044 * 2 1 3 5 5 N 1.47272 * 108.17927 * 167.04560 * 4 2 1 6 6 C 1.36942 * 121.35602 * 118.49720 * 5 4 2 7 7 H 1.08000 * 120.00132 * 335.99727 * 6 5 4 8 8 C 1.38807 * 120.00036 * 155.99626 * 6 5 4 9 9 N 1.31625 * 120.00263 * 344.69223 * 8 6 5 10 10 Si 1.86794 * 120.00203 * 164.68959 * 8 6 5 11 11 H 1.48503 * 109.47299 * 94.66337 * 10 8 6 12 12 H 1.48501 * 109.47242 * 214.66710 * 10 8 6 13 13 H 1.48504 * 109.47319 * 334.66794 * 10 8 6 14 14 C 1.47053 * 117.29562 * 298.48644 * 5 4 2 15 15 C 1.50439 * 108.88761 * 42.72840 * 14 5 4 16 16 O 1.21280 * 118.48936 * 167.29806 * 15 14 5 17 17 N 1.33374 * 123.02570 * 347.31695 * 15 14 5 18 18 H 1.08992 * 109.47819 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47082 * 300.00370 * 1 2 3 20 20 H 1.09004 * 109.46903 * 59.99719 * 1 2 3 21 21 H 1.08997 * 109.72013 * 286.70647 * 4 2 1 22 22 H 1.09005 * 109.72403 * 47.36272 * 4 2 1 23 23 H 0.96996 * 120.00116 * 180.02562 * 9 8 6 24 24 H 1.09003 * 109.56267 * 282.91139 * 14 5 4 25 25 H 1.08990 * 109.57364 * 162.55395 * 14 5 4 26 26 H 0.96994 * 117.71010 * 184.27716 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 6 2.0326 -0.7085 1.2593 5 7 3.4714 -0.9750 1.0934 6 6 4.3992 -0.4327 1.9422 7 1 4.1703 0.4722 2.4855 8 6 5.6337 -1.0461 2.1045 9 7 5.8124 -2.2842 1.6951 10 14 7.0417 -0.1145 2.9038 11 1 7.0836 -0.4297 4.3543 12 1 8.3238 -0.5178 2.2723 13 1 6.8371 1.3449 2.7202 14 6 3.8716 -1.8473 -0.0208 15 6 3.0777 -1.4721 -1.2424 16 8 3.4253 -1.9148 -2.3167 17 7 2.0094 -0.6749 -1.1985 18 1 -0.3634 -1.0275 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8748 -0.0698 2.1284 22 1 1.4970 -1.6487 1.3911 23 1 6.6750 -2.7130 1.8088 24 1 3.6716 -2.8867 0.2395 25 1 4.9348 -1.7177 -0.2224 26 1 1.5173 -0.5343 -2.0224 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261051933.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = -17.432458 kcal Electronic energy + Delta-G solvation = -11528.887548 eV Core-core repulsion = 9415.060837 eV Total energy + Delta-G solvation = -2113.826710 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.28426 -36.24425 -34.28633 -31.07914 -30.46338 -26.94121 -25.85807 -22.28163 -21.66708 -18.51153 -17.24090 -16.02958 -15.69461 -14.82221 -14.37093 -13.92992 -13.31042 -13.04248 -12.39232 -12.21181 -11.84986 -11.37183 -11.32548 -10.85104 -10.63138 -10.48093 -10.26022 -9.96991 -9.09547 -8.65747 -8.45413 -6.92078 -5.90665 -3.33643 3.33604 3.41236 3.43195 3.50215 3.99493 4.39496 5.13737 5.24015 5.34857 5.51752 5.61570 5.79912 5.95432 6.09291 6.25764 6.45659 6.65817 6.95081 7.22379 7.47137 7.66463 8.09258 8.20663 8.90931 9.10329 9.65715 10.20009 11.19443 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.050795 B = 0.014164 C = 0.012001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.098415 B = 1976.396379 C = 2332.655218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.066 0.934 4 C 0.134 3.866 5 N -0.596 5.596 6 C -0.259 4.259 7 H 0.074 0.926 8 C 0.003 3.997 9 N -0.906 5.906 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.164 3.836 15 C 0.501 3.499 16 O -0.583 6.583 17 N -0.717 5.717 18 H 0.059 0.941 19 H 0.069 0.931 20 H 0.053 0.947 21 H 0.074 0.926 22 H 0.032 0.968 23 H 0.258 0.742 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 4.304 -0.709 9.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.084 0.916 4 C 0.007 3.993 5 N -0.320 5.320 6 C -0.388 4.388 7 H 0.092 0.908 8 C -0.196 4.196 9 N -0.550 5.550 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.036 3.964 15 C 0.290 3.710 16 O -0.463 6.463 17 N -0.368 5.368 18 H 0.078 0.922 19 H 0.087 0.913 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.649 3.936 -0.990 8.659 hybrid contribution 0.466 0.505 0.128 0.699 sum -7.183 4.440 -0.861 8.489 Atomic orbital electron populations 1.22127 0.95413 1.02302 1.01991 1.21585 0.93008 0.96972 0.87344 0.91588 1.21299 0.86374 0.97663 0.93992 1.44182 1.00187 1.56990 1.30630 1.19177 0.94296 1.04721 1.20612 0.90830 1.25077 0.99562 0.95270 0.99686 1.69966 1.23898 1.10541 1.50575 0.86173 0.81823 0.79345 0.78779 1.21288 1.21374 1.20327 1.20984 0.99251 0.94511 0.81640 1.22084 0.79929 0.76218 0.92777 1.90632 1.68889 1.55499 1.31297 1.45627 1.30028 1.49352 1.11781 0.92236 0.91253 0.92822 0.90722 0.94975 0.93149 0.91925 0.86706 0.78747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.33 37.16 0.35 -1.56 15 2 C 0.12 1.92 3.85 -68.39 -0.26 1.66 15 3 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 4 C 0.13 2.58 5.91 -3.63 -0.02 2.56 15 5 N -0.60 -14.60 3.02 -173.70 -0.52 -15.13 15 6 C -0.26 -6.88 9.70 -15.06 -0.15 -7.03 15 7 H 0.07 1.87 7.87 -52.49 -0.41 1.46 15 8 C 0.00 0.08 5.01 -17.43 -0.09 -0.01 15 9 N -0.91 -25.94 11.07 55.49 0.61 -25.32 15 10 Si 0.91 21.28 29.58 -169.99 -5.03 16.26 15 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 14 C 0.16 4.12 5.13 -5.02 -0.03 4.09 15 15 C 0.50 11.47 7.84 -11.74 -0.09 11.38 15 16 O -0.58 -14.79 17.80 5.56 0.10 -14.69 15 17 N -0.72 -13.23 5.12 -54.79 -0.28 -13.51 15 18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.07 1.33 7.96 -51.93 -0.41 0.92 15 22 H 0.03 0.61 8.09 -51.93 -0.42 0.19 15 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 24 H 0.06 1.64 8.14 -51.93 -0.42 1.22 15 25 H 0.12 3.22 6.43 -51.93 -0.33 2.89 15 26 H 0.38 6.16 8.61 -40.82 -0.35 5.81 15 LS Contribution 222.67 15.07 3.36 3.36 Total: -1.00 -30.65 222.67 -5.23 -35.89 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.18 Total: 2.05 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -0.29 Total: 11.09 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.19 Total: -53.96 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.10 Total: -14.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.65 -5.23 -35.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051933.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.456 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds