Wall clock time and date at job start Mon Mar 30 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.62223 * 2 1 4 4 C 1.53246 * 109.62276 * 120.36706 * 2 1 3 5 5 N 1.46377 * 109.15315 * 175.20442 * 4 2 1 6 6 C 1.34134 * 121.33948 * 330.93703 * 5 4 2 7 7 O 1.21584 * 118.69377 * 180.59555 * 6 5 4 8 8 N 1.34132 * 122.60889 * 0.57463 * 6 5 4 9 9 C 1.37194 * 119.33253 * 179.40975 * 8 6 5 10 10 H 1.08004 * 119.99603 * 337.60924 * 9 8 6 11 11 C 1.38874 * 120.00192 * 157.34218 * 9 8 6 12 12 N 1.31475 * 120.00045 * 345.02692 * 11 9 8 13 13 Si 1.86807 * 119.99990 * 165.02948 * 11 9 8 14 14 H 1.48499 * 109.46819 * 59.99726 * 13 11 9 15 15 H 1.48499 * 109.46762 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47056 * 299.99901 * 13 11 9 17 17 C 1.46377 * 121.33859 * 359.68215 * 8 6 5 18 18 H 1.09002 * 109.47179 * 299.63178 * 1 2 3 19 19 H 1.08996 * 109.47351 * 59.63449 * 1 2 3 20 20 H 1.09000 * 109.47129 * 179.63205 * 1 2 3 21 21 H 1.09001 * 109.52245 * 55.29374 * 4 2 1 22 22 H 1.09001 * 109.57381 * 295.13713 * 4 2 1 23 23 H 0.96996 * 119.32812 * 150.92448 * 5 4 2 24 24 H 0.96997 * 120.00136 * 180.02562 * 12 11 9 25 25 H 1.09009 * 109.52476 * 148.70855 * 17 8 6 26 26 H 1.08995 * 109.52807 * 268.90178 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0266 0.0000 4 6 2.0446 -0.7297 1.2454 5 7 3.5038 -0.8242 1.1780 6 6 4.1461 -0.8733 0.0015 7 8 5.3587 -0.9626 0.0017 8 7 3.5038 -0.8282 -1.1751 9 6 4.2291 -0.8710 -2.3389 10 1 5.2695 -0.5808 -2.3377 11 6 3.6272 -1.2928 -3.5172 12 7 2.4741 -1.9230 -3.4773 13 14 4.4561 -0.9648 -5.1588 14 1 5.7877 -1.6218 -5.1809 15 1 3.6167 -1.5114 -6.2550 16 1 4.6232 0.4989 -5.3453 17 6 2.0450 -0.7284 -1.2428 18 1 -0.3633 0.5081 0.8933 19 1 -0.3634 0.5195 -0.8866 20 1 -0.3633 -1.0276 -0.0066 21 1 1.6160 -1.7312 1.2840 22 1 1.7563 -0.1755 2.1386 23 1 4.0166 -0.8517 2.0009 24 1 2.0538 -2.2179 -4.3003 25 1 1.7589 -0.1731 -2.1362 26 1 1.6127 -1.7283 -1.2803 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087255.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:39 Heat of formation + Delta-G solvation = -49.673101 kcal Electronic energy + Delta-G solvation = -11666.778178 eV Core-core repulsion = 9551.553408 eV Total energy + Delta-G solvation = -2115.224769 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.28387 -37.56135 -36.36589 -33.56049 -33.06563 -27.83763 -26.92612 -25.88968 -22.75734 -20.35513 -18.81538 -18.08638 -17.59571 -16.52810 -16.38600 -15.46363 -15.22056 -14.67179 -14.37119 -13.41622 -13.31494 -13.14678 -12.97861 -12.68255 -12.12898 -12.05669 -11.81080 -11.68231 -10.95569 -10.74356 -9.92451 -9.55929 -8.27898 -5.91236 1.41165 1.43099 1.52770 2.21420 2.40286 2.60703 3.14470 3.49573 3.92028 4.02208 4.34343 4.54967 4.69093 4.83877 4.91781 5.14917 5.23642 5.33623 5.48840 5.54080 5.68908 6.29730 6.43758 6.77111 7.25748 7.67370 8.21887 8.76947 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.046335 B = 0.016332 C = 0.012738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.144888 B = 1714.053143 C = 2197.559149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.130 4.130 3 H 0.067 0.933 4 C 0.121 3.879 5 N -0.742 5.742 6 C 0.650 3.350 7 O -0.682 6.682 8 N -0.483 5.483 9 C -0.333 4.333 10 H 0.068 0.932 11 C -0.009 4.009 12 N -0.905 5.905 13 Si 0.992 3.008 14 H -0.277 1.277 15 H -0.269 1.269 16 H -0.268 1.268 17 C 0.159 3.841 18 H 0.088 0.912 19 H 0.057 0.943 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.117 0.883 23 H 0.411 0.589 24 H 0.271 0.729 25 H 0.054 0.946 26 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.006 3.530 5.631 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 H 0.085 0.915 4 C -0.003 4.003 5 N -0.400 5.400 6 C 0.352 3.648 7 O -0.569 6.569 8 N -0.207 5.207 9 C -0.462 4.462 10 H 0.086 0.914 11 C -0.209 4.209 12 N -0.545 5.545 13 Si 0.815 3.185 14 H -0.203 1.203 15 H -0.193 1.193 16 H -0.193 1.193 17 C 0.036 3.964 18 H 0.107 0.893 19 H 0.076 0.924 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.135 0.865 23 H 0.248 0.752 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.690 3.400 5.296 9.937 hybrid contribution 0.743 -0.122 -0.613 0.971 sum -6.948 3.277 4.683 8.996 Atomic orbital electron populations 1.21555 0.90574 1.02857 1.03197 1.21896 0.99052 0.99261 0.94807 0.91482 1.21714 0.78766 1.00678 0.99105 1.44721 1.08264 1.81331 1.05714 1.15999 0.85013 0.81635 0.82191 1.90687 1.15065 1.63794 1.87383 1.42777 1.06677 1.68260 1.02942 1.19484 0.96470 1.44610 0.85618 0.91361 1.26059 0.97524 0.94812 1.02504 1.70112 1.18524 1.36539 1.29301 0.85031 0.77883 0.78839 0.76742 1.20286 1.19342 1.19267 1.21209 0.79229 0.99221 0.96775 0.89314 0.92418 0.92003 0.92038 0.86545 0.75172 0.91971 0.92718 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 9.22 71.98 0.66 -2.30 15 2 C -0.13 -4.33 2.96 -10.72 -0.03 -4.36 15 3 H 0.07 2.30 8.14 -2.39 -0.02 2.28 15 4 C 0.12 3.58 6.50 86.49 0.56 4.15 15 5 N -0.74 -29.24 5.58 -479.86 -2.68 -31.92 15 6 C 0.65 35.05 8.14 179.46 1.46 36.51 15 7 O -0.68 -42.53 16.61 -3.98 -0.07 -42.60 15 8 N -0.48 -26.94 2.97 -654.28 -1.94 -28.88 15 9 C -0.33 -20.25 9.17 84.01 0.77 -19.48 15 10 H 0.07 4.42 7.32 -2.91 -0.02 4.40 15 11 C -0.01 -0.48 5.00 84.90 0.42 -0.06 15 12 N -0.91 -50.31 10.79 21.65 0.23 -50.08 15 13 Si 0.99 44.42 29.58 68.60 2.03 46.45 15 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 15 H -0.27 -11.24 7.11 99.48 0.71 -10.54 15 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 17 C 0.16 7.40 4.04 86.40 0.35 7.74 15 18 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 19 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.06 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 23 H 0.41 14.05 8.88 -92.71 -0.82 13.23 15 24 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 25 H 0.05 2.73 7.06 -2.38 -0.02 2.71 15 26 H 0.04 2.24 7.55 -2.39 -0.02 2.22 15 Total: -1.00 -73.65 219.86 2.13 -71.52 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.35 Total: 13.31 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 4.20 Total: 22.20 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.39 Total: -110.89 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.07 Total: -42.60 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.65 2.13 -71.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087255.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.846 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds