Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.75166 * 2 1 4 4 C 1.52988 * 109.72034 * 120.63872 * 2 1 3 5 5 N 1.45653 * 110.77273 * 166.39774 * 4 2 1 6 6 C 1.33381 * 124.58554 * 338.37922 * 5 4 2 7 7 O 1.21286 * 118.48267 * 184.01586 * 6 5 4 8 8 C 1.50399 * 123.05174 * 3.76595 * 6 5 4 9 9 N 1.47049 * 108.92690 * 347.77059 * 8 6 5 10 10 C 1.36943 * 121.35156 * 222.50214 * 9 8 6 11 11 H 1.08002 * 119.99462 * 154.71932 * 10 9 8 12 12 C 1.38800 * 119.99981 * 334.71783 * 10 9 8 13 13 N 1.31624 * 120.00261 * 345.52974 * 12 10 9 14 14 Si 1.86807 * 119.99979 * 165.52740 * 12 10 9 15 15 H 1.48503 * 109.46788 * 94.52778 * 14 12 10 16 16 H 1.48496 * 109.47355 * 214.52748 * 14 12 10 17 17 H 1.48497 * 109.46836 * 334.53361 * 14 12 10 18 18 H 1.08999 * 109.46620 * 299.36181 * 1 2 3 19 19 H 1.08996 * 109.47020 * 59.35870 * 1 2 3 20 20 H 1.08990 * 109.46975 * 179.36343 * 1 2 3 21 21 H 1.09003 * 109.21614 * 46.06312 * 4 2 1 22 22 H 1.08998 * 109.17698 * 286.70398 * 4 2 1 23 23 H 0.96997 * 117.70527 * 158.09598 * 5 4 2 24 24 H 1.09001 * 109.72900 * 227.83040 * 8 6 5 25 25 H 1.09007 * 109.47324 * 107.55387 * 8 6 5 26 26 H 0.97002 * 119.99534 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0463 -0.7339 1.2391 5 7 3.4666 -1.0297 1.1100 6 6 4.1245 -1.0930 -0.0485 7 8 5.2922 -1.4208 -0.0335 8 6 3.4843 -0.7821 -1.3735 9 7 2.0269 -0.7063 -1.1929 10 6 1.1667 -1.2694 -2.0975 11 1 0.1773 -1.5708 -1.7865 12 6 1.5663 -1.4526 -3.4141 13 7 2.6402 -0.8411 -3.8671 14 14 0.5799 -2.5671 -4.5431 15 1 -0.3944 -1.7536 -5.3138 16 1 1.4990 -3.2593 -5.4818 17 1 -0.1490 -3.5742 -3.7310 18 1 -0.3632 0.5039 0.8957 19 1 -0.3633 0.5237 -0.8841 20 1 -0.3633 -1.0275 -0.0114 21 1 1.4950 -1.6666 1.3593 22 1 1.8885 -0.1082 2.1175 23 1 3.9701 -1.1879 1.9238 24 1 3.7230 -1.5674 -2.0908 25 1 3.8567 0.1740 -1.7415 26 1 2.9196 -0.9695 -4.7871 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261089663.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -14.668706 kcal Electronic energy + Delta-G solvation = -11644.676669 eV Core-core repulsion = 9530.969804 eV Total energy + Delta-G solvation = -2113.706865 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.23361 -36.39172 -33.85740 -31.74923 -30.10564 -26.53439 -25.64118 -23.24392 -20.95762 -18.52639 -16.86156 -16.21210 -15.59745 -14.72389 -14.49033 -13.91174 -13.26497 -13.17075 -12.51939 -12.15760 -11.51234 -11.27274 -10.91852 -10.82532 -10.63126 -10.37932 -10.05843 -9.96592 -9.08012 -8.64228 -8.44810 -6.87835 -5.88940 -3.32370 3.33643 3.41482 3.43075 3.48914 4.03544 4.39842 5.12717 5.29441 5.48287 5.69265 5.84049 5.92045 6.10249 6.28587 6.34336 6.75574 6.87213 6.98181 7.23265 7.45225 7.70499 8.06538 8.23017 8.91030 9.10851 9.68137 10.22948 11.21360 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.043121 B = 0.016635 C = 0.013131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.172428 B = 1682.810340 C = 2131.889770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.150 3.850 3 H 0.038 0.962 4 C 0.100 3.900 5 N -0.722 5.722 6 C 0.501 3.499 7 O -0.583 6.583 8 C 0.165 3.835 9 N -0.591 5.591 10 C -0.256 4.256 11 H 0.078 0.922 12 C 0.003 3.997 13 N -0.907 5.907 14 Si 0.907 3.093 15 H -0.286 1.286 16 H -0.288 1.288 17 H -0.278 1.278 18 H 0.044 0.956 19 H 0.066 0.934 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.380 0.620 24 H 0.115 0.885 25 H 0.063 0.937 26 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 1.126 7.561 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 H 0.056 0.944 4 C -0.026 4.026 5 N -0.372 5.372 6 C 0.289 3.711 7 O -0.463 6.463 8 C 0.038 3.962 9 N -0.316 5.316 10 C -0.385 4.385 11 H 0.095 0.905 12 C -0.196 4.196 13 N -0.551 5.551 14 Si 0.737 3.263 15 H -0.213 1.213 16 H -0.214 1.214 17 H -0.204 1.204 18 H 0.063 0.937 19 H 0.085 0.915 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.213 0.787 24 H 0.132 0.868 25 H 0.081 0.919 26 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.378 0.982 7.143 7.962 hybrid contribution -0.298 -0.556 -0.265 0.684 sum -3.676 0.426 6.878 7.810 Atomic orbital electron populations 1.21725 0.94471 1.02097 1.00815 1.20772 0.94178 0.93929 0.86876 0.94420 1.22001 0.80947 0.99963 0.99731 1.45455 1.10707 1.72533 1.08526 1.22088 0.86502 0.74556 0.87928 1.90634 1.18092 1.49588 1.87994 1.20955 0.83107 1.02971 0.89211 1.44260 1.00962 1.62683 1.23739 1.19161 0.97567 1.33466 0.88287 0.90478 1.25101 0.98214 0.99584 0.96671 1.69964 1.26254 1.43035 1.15821 0.86209 0.79159 0.80443 0.80530 1.21332 1.21444 1.20353 0.93720 0.91493 0.92191 0.92433 0.92049 0.78677 0.86771 0.91950 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.00 37.16 0.30 -1.92 15 2 C 0.15 2.87 3.56 -67.51 -0.24 2.63 15 3 H 0.04 0.74 8.14 -51.93 -0.42 0.31 15 4 C 0.10 1.63 6.69 -4.50 -0.03 1.60 15 5 N -0.72 -13.33 5.42 -61.33 -0.33 -13.66 15 6 C 0.50 11.43 7.84 -11.75 -0.09 11.34 15 7 O -0.58 -14.76 17.80 5.55 0.10 -14.66 15 8 C 0.17 4.13 5.11 -5.04 -0.03 4.10 15 9 N -0.59 -14.25 3.02 -166.18 -0.50 -14.75 15 10 C -0.26 -6.63 8.78 -15.06 -0.13 -6.76 15 11 H 0.08 1.91 6.19 -52.49 -0.32 1.58 15 12 C 0.00 0.08 5.02 -17.43 -0.09 0.00 15 13 N -0.91 -25.79 11.11 55.49 0.62 -25.18 15 14 Si 0.91 21.17 29.58 -169.99 -5.03 16.14 15 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 18 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 19 H 0.07 1.21 7.92 -51.93 -0.41 0.80 15 20 H 0.06 1.02 7.11 -51.93 -0.37 0.65 15 21 H 0.06 0.93 8.07 -51.93 -0.42 0.51 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.38 6.09 8.80 -40.82 -0.36 5.74 15 24 H 0.11 3.18 6.50 -51.93 -0.34 2.84 15 25 H 0.06 1.63 8.14 -51.93 -0.42 1.21 15 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 LS Contribution 218.71 15.07 3.30 3.30 Total: -1.00 -30.33 218.71 -5.21 -35.54 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.05 Total: 2.28 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -0.31 Total: 10.99 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.22 Total: -53.58 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.33 -5.21 -35.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089663.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.870 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds