Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.75166 * 2 1 4 4 C 1.52988 * 109.72034 * 120.63872 * 2 1 3 5 5 N 1.45653 * 110.77273 * 166.39774 * 4 2 1 6 6 C 1.33381 * 124.58554 * 338.37922 * 5 4 2 7 7 O 1.21286 * 118.48267 * 184.01586 * 6 5 4 8 8 C 1.50399 * 123.05174 * 3.76595 * 6 5 4 9 9 N 1.47049 * 108.92690 * 347.77059 * 8 6 5 10 10 C 1.36943 * 121.35156 * 222.50214 * 9 8 6 11 11 H 1.08002 * 119.99462 * 154.71932 * 10 9 8 12 12 C 1.38800 * 119.99981 * 334.71783 * 10 9 8 13 13 N 1.31624 * 120.00261 * 345.52974 * 12 10 9 14 14 Si 1.86807 * 119.99979 * 165.52740 * 12 10 9 15 15 H 1.48503 * 109.46788 * 94.52778 * 14 12 10 16 16 H 1.48496 * 109.47355 * 214.52748 * 14 12 10 17 17 H 1.48497 * 109.46836 * 334.53361 * 14 12 10 18 18 H 1.08999 * 109.46620 * 299.36181 * 1 2 3 19 19 H 1.08996 * 109.47020 * 59.35870 * 1 2 3 20 20 H 1.08990 * 109.46975 * 179.36343 * 1 2 3 21 21 H 1.09003 * 109.21614 * 46.06312 * 4 2 1 22 22 H 1.08998 * 109.17698 * 286.70398 * 4 2 1 23 23 H 0.96997 * 117.70527 * 158.09598 * 5 4 2 24 24 H 1.09001 * 109.72900 * 227.83040 * 8 6 5 25 25 H 1.09007 * 109.47324 * 107.55387 * 8 6 5 26 26 H 0.97002 * 119.99534 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0463 -0.7339 1.2391 5 7 3.4666 -1.0297 1.1100 6 6 4.1245 -1.0930 -0.0485 7 8 5.2922 -1.4208 -0.0335 8 6 3.4843 -0.7821 -1.3735 9 7 2.0269 -0.7063 -1.1929 10 6 1.1667 -1.2694 -2.0975 11 1 0.1773 -1.5708 -1.7865 12 6 1.5663 -1.4526 -3.4141 13 7 2.6402 -0.8411 -3.8671 14 14 0.5799 -2.5671 -4.5431 15 1 -0.3944 -1.7536 -5.3138 16 1 1.4990 -3.2593 -5.4818 17 1 -0.1490 -3.5742 -3.7310 18 1 -0.3632 0.5039 0.8957 19 1 -0.3633 0.5237 -0.8841 20 1 -0.3633 -1.0275 -0.0114 21 1 1.4950 -1.6666 1.3593 22 1 1.8885 -0.1082 2.1175 23 1 3.9701 -1.1879 1.9238 24 1 3.7230 -1.5674 -2.0908 25 1 3.8567 0.1740 -1.7415 26 1 2.9196 -0.9695 -4.7871 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261089663.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -37.498991 kcal Electronic energy + Delta-G solvation = -11645.666665 eV Core-core repulsion = 9530.969804 eV Total energy + Delta-G solvation = -2114.696860 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.98673 -38.14759 -35.62749 -33.49936 -31.92613 -28.47315 -27.08626 -25.08487 -22.64704 -20.27131 -18.61750 -17.94749 -17.39894 -16.42512 -16.31568 -15.66448 -15.14250 -14.84760 -14.15502 -13.67422 -13.33972 -13.03109 -12.66769 -12.41377 -12.33447 -12.02544 -11.90033 -11.75488 -10.94878 -10.64782 -10.00020 -8.82514 -7.90807 -5.35976 1.48194 1.51180 1.59753 1.65670 2.44902 2.51467 3.27646 3.43160 3.91072 4.15860 4.42623 4.54062 4.73683 4.85360 4.96374 5.02731 5.24164 5.39691 5.54158 5.68859 5.94465 6.27778 6.36607 7.00860 7.29277 7.74493 8.26841 9.18711 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.043121 B = 0.016635 C = 0.013131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.172428 B = 1682.810340 C = 2131.889770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.136 3.864 3 H 0.036 0.964 4 C 0.102 3.898 5 N -0.703 5.703 6 C 0.504 3.496 7 O -0.614 6.614 8 C 0.174 3.826 9 N -0.607 5.607 10 C -0.252 4.252 11 H 0.092 0.908 12 C -0.057 4.057 13 N -0.945 5.945 14 Si 0.969 3.031 15 H -0.283 1.283 16 H -0.300 1.300 17 H -0.265 1.265 18 H 0.089 0.911 19 H 0.045 0.955 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.115 0.885 23 H 0.399 0.601 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 0.990 9.722 11.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.031 3.969 3 H 0.054 0.946 4 C -0.023 4.023 5 N -0.353 5.353 6 C 0.291 3.709 7 O -0.497 6.497 8 C 0.045 3.955 9 N -0.333 5.333 10 C -0.381 4.381 11 H 0.109 0.891 12 C -0.252 4.252 13 N -0.591 5.591 14 Si 0.797 3.203 15 H -0.210 1.210 16 H -0.227 1.227 17 H -0.190 1.190 18 H 0.108 0.892 19 H 0.064 0.936 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.133 0.867 23 H 0.235 0.765 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.136 0.855 9.380 10.728 hybrid contribution 0.183 -0.454 -0.837 0.969 sum -4.953 0.401 8.543 9.883 Atomic orbital electron populations 1.21663 0.92248 1.02234 1.02106 1.21157 0.96152 0.93718 0.85888 0.94610 1.22136 0.79079 1.01139 0.99914 1.45256 1.11810 1.70525 1.07699 1.21505 0.86024 0.74933 0.88433 1.90616 1.19303 1.51303 1.88505 1.20530 0.84447 1.00507 0.90020 1.44518 1.00253 1.63545 1.24982 1.19583 0.97958 1.32158 0.88447 0.89062 1.25889 0.99450 1.01379 0.98455 1.70133 1.28278 1.45059 1.15644 0.85233 0.77619 0.78850 0.78608 1.21011 1.22679 1.18961 0.89201 0.93579 0.92461 0.91334 0.86721 0.76521 0.90461 0.94435 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 8.00 71.98 0.58 -3.13 15 2 C 0.14 4.86 3.56 44.84 0.16 5.02 15 3 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 4 C 0.10 2.87 6.69 86.53 0.58 3.44 15 5 N -0.70 -23.86 5.42 -467.12 -2.53 -26.40 15 6 C 0.50 22.76 7.84 87.78 0.69 23.45 15 7 O -0.61 -31.21 17.80 -3.05 -0.05 -31.26 15 8 C 0.17 8.89 5.11 85.43 0.44 9.32 15 9 N -0.61 -28.97 3.02 -679.66 -2.05 -31.02 15 10 C -0.25 -12.94 8.78 84.03 0.74 -12.21 15 11 H 0.09 4.35 6.19 -2.91 -0.02 4.33 15 12 C -0.06 -3.11 5.02 84.86 0.43 -2.68 15 13 N -0.94 -55.70 11.11 21.65 0.24 -55.46 15 14 Si 0.97 43.91 29.58 68.60 2.03 45.94 15 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 16 H -0.30 -14.03 7.11 99.48 0.71 -13.32 15 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 18 H 0.09 1.87 8.14 -2.39 -0.02 1.85 15 19 H 0.05 1.55 7.92 -2.39 -0.02 1.53 15 20 H 0.06 1.73 7.11 -2.39 -0.02 1.71 15 21 H 0.07 1.87 8.07 -2.39 -0.02 1.85 15 22 H 0.11 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.40 11.32 8.80 -92.71 -0.82 10.50 15 24 H 0.08 4.51 6.50 -2.39 -0.02 4.50 15 25 H 0.04 2.07 8.14 -2.38 -0.02 2.06 15 26 H 0.25 14.43 8.31 -92.71 -0.77 13.66 15 Total: -1.00 -66.96 218.71 1.60 -65.36 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.37 Total: 9.64 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 3.60 Total: 23.21 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -4.34 Total: -112.88 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.05 Total: -31.26 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.96 1.60 -65.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089663.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.859 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds