Wall clock time and date at job start Mon Mar 30 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46018 * 118.53569 * 90.00102 * 10 9 7 12 12 C 1.52980 * 110.04158 * 161.81342 * 11 10 9 13 13 N 1.47193 * 108.72926 * 50.29486 * 12 11 10 14 14 C 1.46899 * 110.17129 * 290.99777 * 13 12 11 15 15 C 1.33716 * 118.54181 * 269.73014 * 10 9 7 16 16 O 1.21283 * 118.61906 * 1.70728 * 15 10 9 17 17 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 19 19 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 20 20 H 1.09000 * 109.37394 * 281.99001 * 11 10 9 21 21 H 1.08999 * 109.37317 * 41.63804 * 11 10 9 22 22 H 1.08998 * 109.59348 * 170.06159 * 12 11 10 23 23 H 1.08996 * 109.59682 * 290.36773 * 12 11 10 24 24 H 1.00903 * 110.99694 * 167.63090 * 13 12 11 25 25 H 1.09006 * 109.38476 * 170.45678 * 14 13 12 26 26 H 1.09001 * 109.38784 * 290.24785 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.2327 -3.2328 -1.2829 12 6 5.1387 -4.4504 -1.0912 13 7 4.5971 -5.2753 0.0010 14 6 4.7474 -4.5777 1.2850 15 6 4.2174 -3.1762 1.1745 16 8 3.9725 -2.5657 2.1935 17 1 -0.4850 0.8401 -0.0004 18 1 3.8751 -0.6798 -0.8895 19 1 3.8745 -0.6810 0.8905 20 1 3.2795 -3.5538 -1.7031 21 1 4.7097 -2.5313 -1.9673 22 1 5.1659 -5.0343 -2.0112 23 1 6.1461 -4.1202 -0.8379 24 1 5.0435 -6.1798 0.0265 25 1 4.1958 -5.1159 2.0559 26 1 5.8028 -4.5399 1.5550 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092663.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:13 Heat of formation + Delta-G solvation = -53.295647 kcal Electronic energy + Delta-G solvation = -11401.318827 eV Core-core repulsion = 9285.936972 eV Total energy + Delta-G solvation = -2115.381855 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.20820 -37.64775 -36.14809 -34.45127 -30.91723 -30.04718 -26.67105 -24.60064 -23.38098 -19.43843 -19.11153 -18.05378 -17.66664 -16.72557 -16.45001 -15.63521 -15.55870 -14.74292 -14.36653 -14.22815 -13.72247 -13.33493 -13.09103 -12.60233 -12.51643 -12.08915 -12.03096 -11.78207 -10.83806 -10.78668 -9.57436 -9.46106 -8.35566 -6.41293 1.30354 1.35784 1.46863 1.69515 2.28541 2.30814 2.97852 3.17889 3.63917 3.96908 4.21144 4.33120 4.43925 4.61516 4.71529 4.83222 4.94821 5.03189 5.43509 5.48095 5.74926 6.20736 6.46203 6.59572 6.70580 7.18362 7.34926 8.82063 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.060313 B = 0.012352 C = 0.011941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.135353 B = 2266.205636 C = 2344.318084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.247 1.247 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.538 4.538 8 H 0.022 0.978 9 C 0.217 3.783 10 N -0.591 5.591 11 C 0.108 3.892 12 C 0.048 3.952 13 N -0.691 5.691 14 C 0.059 3.941 15 C 0.492 3.508 16 O -0.610 6.610 17 H 0.269 0.731 18 H 0.052 0.948 19 H 0.021 0.979 20 H 0.053 0.947 21 H 0.095 0.905 22 H 0.129 0.871 23 H 0.057 0.943 24 H 0.371 0.629 25 H 0.111 0.889 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.245 -8.214 -4.568 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.171 1.171 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.576 4.576 8 H 0.040 0.960 9 C 0.094 3.906 10 N -0.320 5.320 11 C -0.015 4.015 12 C -0.081 4.081 13 N -0.327 5.327 14 C -0.073 4.073 15 C 0.281 3.719 16 O -0.492 6.492 17 H 0.078 0.922 18 H 0.070 0.930 19 H 0.040 0.960 20 H 0.071 0.929 21 H 0.113 0.887 22 H 0.147 0.853 23 H 0.075 0.925 24 H 0.193 0.807 25 H 0.129 0.871 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.328 -7.623 -4.186 15.915 hybrid contribution 0.352 0.707 0.371 0.872 sum 13.680 -6.916 -3.815 15.797 Atomic orbital electron populations 1.70065 1.08322 1.28444 1.51870 1.25941 0.95770 1.03600 0.93684 0.85619 0.79017 0.77739 0.80000 1.17125 1.20541 1.18048 1.21513 0.91633 0.93111 1.51349 0.96001 1.19418 0.92949 0.80884 0.97312 1.47536 1.62710 1.14895 1.06905 1.21767 1.00290 0.95223 0.84180 1.22386 0.95343 0.93571 0.96783 1.60656 1.62858 1.07023 1.02145 1.21951 1.01825 0.88991 0.94540 1.21032 0.78010 0.89964 0.82878 1.90662 1.55034 1.67025 1.36465 0.92174 0.93038 0.96048 0.92895 0.88690 0.85332 0.92468 0.80715 0.87068 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.71 13.96 21.45 0.30 -61.41 15 2 C 0.01 0.47 5.47 84.66 0.46 0.93 15 3 Si 0.95 45.49 27.47 68.60 1.88 47.38 15 4 H -0.25 -10.64 7.11 99.48 0.71 -9.94 15 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 15 6 H -0.26 -11.81 6.54 99.48 0.65 -11.16 15 7 C -0.54 -33.29 9.93 25.60 0.25 -33.04 15 8 H 0.02 1.53 8.06 -2.91 -0.02 1.50 15 9 C 0.22 11.09 4.10 85.63 0.35 11.44 15 10 N -0.59 -25.56 2.81 -829.59 -2.33 -27.89 15 11 C 0.11 3.37 6.62 86.46 0.57 3.95 15 12 C 0.05 0.99 6.62 86.24 0.57 1.56 15 13 N -0.69 -15.84 6.93 -518.05 -3.59 -19.43 15 14 C 0.06 1.68 6.68 85.41 0.57 2.25 15 15 C 0.49 21.39 7.56 87.68 0.66 22.05 15 16 O -0.61 -32.92 16.33 -3.04 -0.05 -32.97 15 17 H 0.27 16.19 8.31 -92.71 -0.77 15.42 15 18 H 0.05 2.34 7.34 -2.39 -0.02 2.32 15 19 H 0.02 1.19 6.31 -2.39 -0.02 1.17 15 20 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.09 2.50 7.98 -2.39 -0.02 2.48 15 22 H 0.13 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.06 1.01 8.08 -2.39 -0.02 0.99 15 24 H 0.37 5.41 8.90 -89.69 -0.80 4.62 15 25 H 0.11 3.10 8.14 -2.38 -0.02 3.08 15 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 Total: -1.00 -81.51 222.78 -0.02 -81.52 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 0.32 Total: 3.65 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 3.44 Total: 9.15 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -5.62 Total: -108.73 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Total: -81.51 -0.02 -81.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092663.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.229 kcal (2) G-P(sol) polarization free energy of solvation -81.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds