Wall clock time and date at job start Mon Mar 30 2020 02:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46864 * 2 1 4 4 C 1.53001 * 109.47232 * 119.99964 * 2 1 3 5 5 C 1.50696 * 110.53908 * 61.16385 * 4 2 1 6 6 H 1.08002 * 120.00344 * 240.21619 * 5 4 2 7 7 C 1.37884 * 120.00127 * 60.21655 * 5 4 2 8 8 N 1.31517 * 119.99706 * 6.08942 * 7 5 4 9 9 Si 1.86795 * 120.00380 * 186.09292 * 7 5 4 10 10 H 1.48501 * 109.46947 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47470 * 119.99814 * 9 7 5 12 12 H 1.48502 * 109.47225 * 240.00054 * 9 7 5 13 13 C 1.54809 * 110.48889 * 183.78348 * 4 2 1 14 14 C 1.54990 * 102.09289 * 139.55875 * 13 4 2 15 15 O 1.44579 * 103.58508 * 323.05250 * 14 13 4 16 16 C 1.43745 * 106.87016 * 39.88198 * 15 14 13 17 17 H 1.09006 * 109.46835 * 179.97438 * 1 2 3 18 18 H 1.08999 * 109.47306 * 299.99847 * 1 2 3 19 19 H 1.09003 * 109.47276 * 60.00293 * 1 2 3 20 20 H 1.08999 * 109.47306 * 240.00153 * 2 1 3 21 21 H 1.08993 * 109.47164 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.47343 * 300.00131 * 3 2 1 23 23 H 1.08999 * 109.47034 * 59.99987 * 3 2 1 24 24 H 0.96999 * 120.00339 * 180.02562 * 8 7 5 25 25 H 1.09001 * 110.90455 * 257.75634 * 13 4 2 26 26 H 1.09007 * 110.90551 * 21.32152 * 13 4 2 27 27 H 1.08994 * 110.61860 * 81.47505 * 14 13 4 28 28 H 1.09002 * 110.61769 * 204.31681 * 14 13 4 29 29 H 1.08993 * 109.88044 * 214.17029 * 16 15 14 30 30 H 1.09003 * 109.88068 * 93.16677 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5746 -2.1545 1.2593 6 1 0.9565 -2.5159 2.0679 7 6 1.9378 -3.0045 0.2363 8 7 2.7862 -2.6010 -0.6840 9 14 1.2248 -4.7293 0.1573 10 1 0.3019 -4.9362 1.3021 11 1 0.4804 -4.8994 -1.1163 12 1 2.3258 -5.7236 0.2237 13 6 3.5849 -0.6526 1.3218 14 6 3.8281 -0.3991 2.8313 15 8 2.7423 0.4782 3.2076 16 6 1.5693 0.0077 2.5228 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 3.1299 1.4426 0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 3.0415 -3.1988 -1.4040 25 1 4.0313 -1.5966 1.0090 26 1 3.9662 0.1736 0.7216 27 1 3.7758 -1.3331 3.3907 28 1 4.7907 0.0877 2.9886 29 1 0.9339 0.8513 2.2536 30 1 1.0184 -0.6820 3.1623 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111856.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:52 Heat of formation + Delta-G solvation = -74.831675 kcal Electronic energy + Delta-G solvation = -12237.879630 eV Core-core repulsion = 10225.104246 eV Total energy + Delta-G solvation = -2012.775384 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55350 -36.58231 -34.10449 -31.35382 -29.68913 -27.83719 -26.40147 -23.76133 -22.41854 -19.89218 -18.23956 -17.10020 -16.73123 -15.86918 -15.64614 -15.04167 -14.74941 -13.86920 -13.67744 -13.42086 -12.87964 -12.83816 -12.69126 -12.42552 -12.16479 -11.88791 -11.80995 -11.59221 -11.13407 -10.74241 -10.53736 -10.33784 -10.19669 -8.02780 -6.12830 1.39661 1.45008 1.52955 2.45800 3.23003 3.34595 4.23052 4.35134 4.50385 4.57290 4.64543 4.69487 4.75377 4.86024 4.97025 5.04825 5.12834 5.15093 5.29426 5.36528 5.51023 5.69123 5.73674 5.83449 5.97561 6.09039 6.24301 6.53248 6.91568 7.51978 8.99842 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.040700 B = 0.018083 C = 0.015637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.795067 B = 1548.029661 C = 1790.228032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.139 4.139 4 C 0.047 3.953 5 C -0.513 4.513 6 H 0.045 0.955 7 C 0.030 3.970 8 N -0.899 5.899 9 Si 0.936 3.064 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.285 1.285 13 C -0.130 4.130 14 C 0.050 3.950 15 O -0.404 6.404 16 C 0.056 3.944 17 H 0.039 0.961 18 H 0.049 0.951 19 H 0.046 0.954 20 H 0.062 0.938 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.258 0.742 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 3.845 1.640 4.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.102 4.102 3 C -0.196 4.196 4 C 0.047 3.953 5 C -0.551 4.551 6 H 0.063 0.937 7 C -0.170 4.170 8 N -0.538 5.538 9 Si 0.763 3.237 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.211 1.211 13 C -0.168 4.168 14 C -0.026 4.026 15 O -0.324 6.324 16 C -0.021 4.021 17 H 0.058 0.942 18 H 0.068 0.932 19 H 0.065 0.935 20 H 0.080 0.920 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.850 3.955 1.624 4.359 hybrid contribution -0.274 -1.434 -0.362 1.504 sum -1.125 2.521 1.262 3.035 Atomic orbital electron populations 1.21652 0.96112 1.00507 0.99968 1.20961 0.94987 0.94068 1.00165 1.21908 1.00375 0.96656 1.00705 1.19416 0.91623 0.93381 0.90918 1.21295 1.31239 0.95429 1.07137 0.93708 1.25426 0.95086 1.00736 0.95717 1.70033 1.32753 1.36784 1.14203 0.85848 0.78422 0.81647 0.77771 1.19741 1.20906 1.21148 1.23045 0.99031 1.00617 0.94075 1.23577 0.90468 0.93140 0.95453 1.88688 1.19775 1.53907 1.70060 1.23440 0.87546 0.97496 0.93580 0.94218 0.93205 0.93463 0.92015 0.93694 0.92918 0.93029 0.93264 0.91858 0.92950 0.93703 0.88465 0.90193 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 8.74 71.98 0.63 -4.35 16 2 C -0.08 -3.64 2.15 -10.79 -0.02 -3.66 16 3 C -0.14 -5.23 8.63 71.98 0.62 -4.60 16 4 C 0.05 2.19 0.16 -51.94 -0.01 2.19 16 5 C -0.51 -26.57 6.88 25.60 0.18 -26.39 16 6 H 0.04 2.37 7.37 -2.91 -0.02 2.35 16 7 C 0.03 1.58 4.99 84.66 0.42 2.00 16 8 N -0.90 -48.32 10.10 21.45 0.22 -48.10 16 9 Si 0.94 42.21 29.54 68.60 2.03 44.23 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 13 C -0.13 -5.93 5.52 31.89 0.18 -5.76 16 14 C 0.05 2.02 7.72 72.66 0.56 2.58 16 15 O -0.40 -17.27 11.54 -148.98 -1.72 -18.98 16 16 C 0.06 2.39 5.96 72.35 0.43 2.82 16 17 H 0.04 1.72 7.31 -2.38 -0.02 1.70 16 18 H 0.05 1.80 6.54 -2.39 -0.02 1.79 16 19 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 20 H 0.06 3.13 6.40 -2.39 -0.02 3.11 16 21 H 0.04 1.71 5.97 -2.39 -0.01 1.70 16 22 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.05 1.83 6.48 -2.39 -0.02 1.82 16 24 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 25 H 0.06 3.24 6.47 -2.39 -0.02 3.22 16 26 H 0.05 2.32 5.64 -2.38 -0.01 2.31 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.08 3.16 5.05 -2.39 -0.01 3.15 16 30 H 0.03 1.54 7.40 -2.39 -0.02 1.53 16 Total: -1.00 -54.34 228.76 4.62 -49.72 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.11 Total: 8.31 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 2.98 Total: -35.18 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.22 Total: -48.10 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -1.72 Total: -18.98 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -54.34 4.62 -49.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111856.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.113 kcal (2) G-P(sol) polarization free energy of solvation -54.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds