Wall clock time and date at job start Mon Mar 30 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86804 * 120.00301 * 2 1 4 4 H 1.48498 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47057 * 300.00315 * 3 2 1 6 6 H 1.48496 * 109.46987 * 59.99829 * 3 2 1 7 7 C 1.37876 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00217 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.66972 * 59.99864 * 9 7 2 11 11 C 1.53349 * 109.67944 * 180.49670 * 9 7 2 12 12 C 1.52913 * 108.67797 * 187.30208 * 11 9 7 13 13 N 1.45757 * 110.48835 * 309.24784 * 12 11 9 14 14 C 1.33357 * 124.10652 * 19.05039 * 13 12 11 15 15 O 1.21277 * 118.24753 * 177.82286 * 14 13 12 16 16 C 1.50181 * 123.50770 * 357.82701 * 14 13 12 17 17 H 0.97009 * 120.00253 * 359.97438 * 1 2 3 18 18 H 1.00896 * 111.00309 * 300.49831 * 10 9 7 19 19 H 1.00902 * 110.99923 * 64.45995 * 10 9 7 20 20 H 1.08995 * 109.59998 * 307.06294 * 11 9 7 21 21 H 1.09006 * 109.59972 * 67.38111 * 11 9 7 22 22 H 1.09000 * 109.30266 * 69.55708 * 12 11 9 23 23 H 1.08996 * 109.30067 * 189.14298 * 12 11 9 24 24 H 0.96999 * 117.94868 * 199.07490 * 13 12 11 25 25 H 1.09003 * 109.38117 * 257.41827 * 16 14 13 26 26 H 1.09000 * 109.41030 * 137.67911 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 0.4042 -2.5823 -1.1959 11 6 2.2432 -3.6682 0.0146 12 6 1.4659 -4.9723 -0.1685 13 7 0.3582 -5.0429 0.7762 14 6 -0.1550 -3.9861 1.4072 15 8 -1.1039 -4.1612 2.1419 16 6 0.3791 -2.5906 1.2565 17 1 -0.4851 0.8401 0.0004 18 1 -0.2574 -1.8211 -1.2246 19 1 0.9651 -2.6058 -2.0344 20 1 2.9574 -3.5506 -0.8003 21 1 2.7742 -3.6867 0.9664 22 1 1.0758 -5.0195 -1.1852 23 1 2.1340 -5.8167 0.0006 24 1 -0.0298 -5.9132 0.9576 25 1 0.9765 -2.3354 2.1318 26 1 -0.4528 -1.8915 1.1712 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120236.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:00 Heat of formation + Delta-G solvation = -70.779194 kcal Electronic energy + Delta-G solvation = -11733.101742 eV Core-core repulsion = 9616.961744 eV Total energy + Delta-G solvation = -2116.139998 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.01013 -37.98302 -35.66847 -33.28436 -30.25761 -30.03439 -27.53217 -24.43600 -22.30290 -19.35831 -18.67675 -17.75789 -17.14119 -16.35841 -16.08363 -15.86047 -14.94243 -14.51741 -14.03708 -13.96006 -13.22706 -12.92113 -12.52050 -12.44141 -12.28910 -12.03184 -11.63560 -11.18784 -10.91384 -10.40053 -9.82046 -9.05356 -8.03759 -6.30181 1.39051 1.44791 1.52796 1.86081 2.40423 2.67048 3.12271 4.14251 4.21254 4.33786 4.49983 4.57903 4.88935 4.93784 5.21780 5.27690 5.54958 5.71234 5.78881 6.06786 6.18610 6.56044 6.72644 7.02044 7.20450 7.46305 7.48167 8.87338 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.058874 B = 0.014728 C = 0.013230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.477375 B = 1900.627959 C = 2115.857814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.027 3.973 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.227 3.773 10 N -0.839 5.839 11 C -0.118 4.118 12 C 0.126 3.874 13 N -0.700 5.700 14 C 0.527 3.473 15 O -0.630 6.630 16 C -0.107 4.107 17 H 0.264 0.736 18 H 0.342 0.658 19 H 0.322 0.678 20 H 0.082 0.918 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.397 0.603 25 H 0.068 0.932 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.350 -6.189 -2.605 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.597 4.597 8 H 0.074 0.926 9 C 0.135 3.865 10 N -0.368 5.368 11 C -0.156 4.156 12 C 0.003 3.997 13 N -0.349 5.349 14 C 0.316 3.684 15 O -0.516 6.516 16 C -0.148 4.148 17 H 0.073 0.927 18 H 0.156 0.844 19 H 0.132 0.868 20 H 0.101 0.899 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.116 0.884 24 H 0.233 0.767 25 H 0.086 0.914 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.604 -6.645 -2.002 8.329 hybrid contribution 0.480 1.907 -0.039 1.967 sum 5.084 -4.738 -2.041 7.243 Atomic orbital electron populations 1.69807 1.06791 1.27433 1.50867 1.25653 0.95528 1.02030 0.94163 0.85618 0.79134 0.80244 0.77185 1.19347 1.20933 1.21472 1.22175 0.93615 0.92426 1.51492 0.92566 1.18404 0.88889 0.91897 0.87296 1.59429 1.20862 1.52362 1.04172 1.21862 0.97795 0.93831 1.02108 1.21398 0.87234 0.98384 0.92686 1.45228 1.36172 1.09080 1.44392 1.20711 0.81505 0.88690 0.77454 1.90589 1.31138 1.87136 1.42689 1.21523 1.01930 0.90900 1.00405 0.92676 0.84375 0.86807 0.89897 0.92315 0.90852 0.88402 0.76736 0.91412 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.29 9.74 21.45 0.21 -48.08 15 2 C 0.03 1.36 5.22 84.66 0.44 1.80 15 3 Si 0.95 41.13 29.54 68.60 2.03 43.15 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 15 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 6 H -0.29 -12.66 7.11 99.48 0.71 -11.95 15 7 C -0.56 -27.41 8.20 25.60 0.21 -27.20 15 8 H 0.06 2.73 7.75 -2.90 -0.02 2.71 15 9 C 0.23 10.04 0.53 2.92 0.00 10.04 15 10 N -0.84 -36.24 7.81 -153.96 -1.20 -37.44 15 11 C -0.12 -4.07 4.99 30.68 0.15 -3.92 15 12 C 0.13 3.61 6.75 86.49 0.58 4.19 15 13 N -0.70 -24.10 5.45 -467.32 -2.55 -26.65 15 14 C 0.53 23.76 7.59 87.71 0.67 24.43 15 15 O -0.63 -32.66 17.78 -3.02 -0.05 -32.72 15 16 C -0.11 -5.16 4.58 29.71 0.14 -5.03 15 17 H 0.26 13.60 8.31 -92.70 -0.77 12.83 15 18 H 0.34 16.79 6.95 -89.70 -0.62 16.17 15 19 H 0.32 12.74 8.99 -89.69 -0.81 11.93 15 20 H 0.08 2.62 8.14 -2.39 -0.02 2.61 15 21 H 0.06 2.02 8.13 -2.38 -0.02 2.00 15 22 H 0.07 2.07 7.73 -2.39 -0.02 2.05 15 23 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.40 11.80 8.80 -92.71 -0.82 10.99 15 25 H 0.07 3.32 8.10 -2.39 -0.02 3.30 15 26 H 0.08 4.61 6.51 -2.39 -0.02 4.60 15 Total: -1.00 -59.86 217.02 -0.40 -60.26 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -1.03 Total: 37.17 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 2.19 Total: 4.31 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -3.54 Total: -112.17 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.05 Total: -32.72 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -59.86 -0.40 -60.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120236.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.520 kcal (2) G-P(sol) polarization free energy of solvation -59.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds