Wall clock time and date at job start Mon Mar 30 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48508 * 109.46739 * 239.99653 * 3 2 1 5 5 H 1.48498 * 109.47259 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47330 * 119.99730 * 3 2 1 7 7 C 1.37881 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00218 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.70143 * 299.48360 * 9 7 2 11 11 C 1.53347 * 109.67525 * 178.96507 * 9 7 2 12 12 C 1.52904 * 108.68532 * 172.74839 * 11 9 7 13 13 N 1.45756 * 110.49853 * 50.72473 * 12 11 9 14 14 C 1.33347 * 124.10303 * 340.96520 * 13 12 11 15 15 O 1.21284 * 118.24317 * 182.22118 * 14 13 12 16 16 C 1.50175 * 123.51361 * 2.19569 * 14 13 12 17 17 H 0.97001 * 119.99995 * 0.02562 * 1 2 3 18 18 H 1.00898 * 110.99859 * 60.51538 * 10 9 7 19 19 H 1.00902 * 110.99941 * 184.46667 * 10 9 7 20 20 H 1.08997 * 109.60147 * 292.49464 * 11 9 7 21 21 H 1.08997 * 109.60132 * 52.98085 * 11 9 7 22 22 H 1.08995 * 109.28795 * 290.41542 * 12 11 9 23 23 H 1.09001 * 109.13871 * 170.94025 * 12 11 9 24 24 H 0.96998 * 117.94762 * 160.93710 * 13 12 11 25 25 H 1.08999 * 109.40441 * 222.29348 * 16 14 13 26 26 H 1.09001 * 109.40296 * 102.54866 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 0.4134 -2.5874 1.2041 11 6 2.2431 -3.6681 -0.0249 12 6 1.4675 -4.9730 0.1583 13 7 0.3523 -5.0396 -0.7779 14 6 -0.1659 -3.9802 -1.4001 15 8 -1.1211 -4.1521 -2.1274 16 6 0.3697 -2.5854 -1.2481 17 1 -0.4850 0.8401 -0.0004 18 1 -0.2591 -1.8358 1.2325 19 1 -0.0445 -3.4847 1.2610 20 1 2.7647 -3.6843 -0.9818 21 1 2.9635 -3.5540 0.7851 22 1 1.0855 -5.0247 1.1778 23 1 2.1371 -5.8147 -0.0186 24 1 -0.0371 -5.9092 -0.9599 25 1 -0.4615 -1.8867 -1.1535 26 1 0.9604 -2.3265 -2.1268 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120237.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:02 Heat of formation + Delta-G solvation = -66.437992 kcal Electronic energy + Delta-G solvation = -11752.133176 eV Core-core repulsion = 9636.181426 eV Total energy + Delta-G solvation = -2115.951750 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.25950 -38.09075 -35.66227 -33.31385 -30.42661 -29.95355 -27.63966 -24.53797 -22.39817 -19.36278 -18.67701 -17.78690 -17.22151 -16.57998 -16.22277 -15.78601 -15.07657 -14.68594 -14.09448 -13.76635 -13.42920 -12.83384 -12.69844 -12.49311 -12.35923 -11.97636 -11.54841 -11.30061 -10.66581 -10.48578 -9.98370 -8.98637 -8.09139 -6.21508 1.46867 1.48274 1.54734 1.68020 2.45762 2.49289 3.16864 4.00695 4.14998 4.29318 4.44715 4.54491 4.77925 4.84437 5.02403 5.27487 5.38169 5.61992 5.88448 5.94544 6.23457 6.39606 6.68559 7.00365 7.27118 7.31556 7.50276 8.95200 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.059279 B = 0.014723 C = 0.013234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.230029 B = 1901.385970 C = 2115.267047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.233 3.767 10 N -0.837 5.837 11 C -0.117 4.117 12 C 0.111 3.889 13 N -0.705 5.705 14 C 0.516 3.484 15 O -0.621 6.621 16 C -0.149 4.149 17 H 0.262 0.738 18 H 0.344 0.656 19 H 0.305 0.695 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.402 0.598 25 H 0.085 0.915 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -7.235 1.423 8.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.141 3.859 10 N -0.368 5.368 11 C -0.155 4.155 12 C -0.012 4.012 13 N -0.356 5.356 14 C 0.305 3.695 15 O -0.505 6.505 16 C -0.191 4.191 17 H 0.072 0.928 18 H 0.160 0.840 19 H 0.117 0.883 20 H 0.080 0.920 21 H 0.103 0.897 22 H 0.095 0.905 23 H 0.126 0.874 24 H 0.238 0.762 25 H 0.103 0.897 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.444 -6.876 1.546 8.332 hybrid contribution -0.777 0.766 -0.863 1.391 sum 3.666 -6.110 0.683 7.159 Atomic orbital electron populations 1.69748 1.06931 1.27427 1.51476 1.25649 0.95607 1.02121 0.93940 0.85665 0.78296 0.79338 0.78534 1.19975 1.21627 1.19892 1.21324 0.93089 0.90864 1.50416 0.92121 1.18488 0.89725 0.93806 0.83858 1.59354 1.29487 1.06010 1.41968 1.21867 0.98311 0.93166 1.02197 1.21600 0.87639 0.99409 0.92590 1.45401 1.35574 1.09338 1.45261 1.20906 0.81820 0.88814 0.77955 1.90615 1.30552 1.87186 1.42121 1.22454 1.02871 0.90602 1.03174 0.92844 0.84023 0.88305 0.92019 0.89739 0.90462 0.87387 0.76225 0.89686 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.47 9.75 21.45 0.21 -49.26 15 2 C 0.03 1.38 5.22 84.66 0.44 1.82 15 3 Si 0.95 42.03 29.54 68.60 2.03 44.05 15 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 7 C -0.52 -26.31 8.20 25.60 0.21 -26.10 15 8 H 0.06 3.01 7.75 -2.91 -0.02 2.99 15 9 C 0.23 10.46 0.65 2.92 0.00 10.46 15 10 N -0.84 -37.31 8.78 -153.97 -1.35 -38.66 15 11 C -0.12 -4.09 5.05 30.68 0.15 -3.93 15 12 C 0.11 2.98 6.41 86.49 0.55 3.54 15 13 N -0.71 -22.40 5.30 -467.35 -2.48 -24.88 15 14 C 0.52 22.08 7.28 87.71 0.64 22.72 15 15 O -0.62 -30.75 17.78 -3.04 -0.05 -30.80 15 16 C -0.15 -7.03 4.56 29.71 0.14 -6.89 15 17 H 0.26 13.81 8.31 -92.71 -0.77 13.04 15 18 H 0.34 17.28 7.01 -89.70 -0.63 16.65 15 19 H 0.31 12.13 6.41 -89.69 -0.57 11.55 15 20 H 0.06 2.11 8.12 -2.39 -0.02 2.09 15 21 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 22 H 0.08 2.00 7.00 -2.39 -0.02 1.98 15 23 H 0.11 2.05 8.14 -2.39 -0.02 2.03 15 24 H 0.40 10.76 8.80 -92.71 -0.82 9.94 15 25 H 0.08 4.63 6.48 -2.39 -0.02 4.62 15 26 H 0.07 3.41 8.09 -2.39 -0.02 3.39 15 Total: -1.00 -60.86 214.09 -0.31 -61.17 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.80 Total: 36.78 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 2.14 Total: 1.61 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -3.62 Total: -112.80 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -60.86 -0.31 -61.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120237.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.271 kcal (2) G-P(sol) polarization free energy of solvation -60.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds