Wall clock time and date at job start Mon Mar 30 2020 02:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.47226 * 2 1 4 4 C 1.52998 * 109.47401 * 239.99937 * 2 1 3 5 5 C 1.52995 * 109.47401 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47032 * 59.99884 * 5 4 2 7 7 C 1.53001 * 109.47246 * 299.99751 * 6 5 4 8 8 H 1.08995 * 109.47283 * 300.00525 * 7 6 5 9 9 C 1.50700 * 109.47304 * 179.97438 * 7 6 5 10 10 H 1.08001 * 120.00168 * 245.44293 * 9 7 6 11 11 C 1.37876 * 119.99556 * 65.44901 * 9 7 6 12 12 N 1.31510 * 120.00244 * 9.57209 * 11 9 7 13 13 Si 1.86801 * 119.99734 * 189.57294 * 11 9 7 14 14 H 1.48499 * 109.47372 * 94.99233 * 13 11 9 15 15 H 1.48500 * 109.47064 * 214.99397 * 13 11 9 16 16 H 1.48506 * 109.47240 * 334.98967 * 13 11 9 17 17 C 1.52996 * 109.47231 * 119.99530 * 2 1 3 18 18 H 1.08996 * 109.47302 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47423 * 300.00376 * 1 2 3 20 20 H 1.09005 * 109.47198 * 59.99826 * 1 2 3 21 21 H 0.96701 * 113.99587 * 299.99614 * 3 2 1 22 22 H 1.09001 * 109.46945 * 59.99501 * 4 2 1 23 23 H 1.09006 * 109.46867 * 300.00256 * 4 2 1 24 24 H 1.08994 * 109.47341 * 179.97438 * 5 4 2 25 25 H 1.08996 * 109.47302 * 300.00053 * 5 4 2 26 26 H 1.08995 * 109.47408 * 60.00199 * 6 5 4 27 27 H 1.09003 * 109.47344 * 180.02562 * 6 5 4 28 28 H 0.96999 * 119.99779 * 179.97438 * 12 11 9 29 29 H 1.09005 * 109.47441 * 300.00067 * 17 2 1 30 30 H 1.09005 * 109.47122 * 60.00230 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7202 1.2490 8 1 3.9334 0.3076 1.2487 9 6 4.0728 -1.4306 2.4795 10 1 3.3750 -1.9171 3.1449 11 6 5.4233 -1.4592 2.7558 12 7 6.2532 -0.7149 2.0582 13 14 6.0741 -2.5555 4.1212 14 1 6.5249 -3.8481 3.5458 15 1 7.2181 -1.8859 4.7907 16 1 4.9968 -2.8038 5.1127 17 6 2.0400 -0.7211 1.2493 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.7210 1.8653 -0.7651 22 1 1.6766 -0.2075 -2.1392 23 1 1.6766 -1.7489 -1.2492 24 1 3.9333 -1.2349 -2.1392 25 1 3.9329 0.3071 -1.2497 26 1 3.7176 -2.4693 0.0000 27 1 5.1705 -1.4408 -0.0002 28 1 7.2033 -0.7348 2.2530 29 1 1.6766 -0.2072 2.1393 30 1 1.6767 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126248.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:16 Heat of formation + Delta-G solvation = -102.237444 kcal Electronic energy + Delta-G solvation = -11885.504419 eV Core-core repulsion = 9871.540632 eV Total energy + Delta-G solvation = -2013.963787 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.22363 -36.40367 -34.35756 -32.11325 -31.59210 -27.19305 -26.77632 -22.90008 -21.99447 -20.45505 -18.32318 -17.14612 -16.65478 -15.97007 -15.42834 -14.94626 -14.47079 -14.10434 -13.83599 -13.26271 -13.00980 -12.80912 -12.66901 -12.61691 -12.48720 -11.89138 -11.83960 -11.63718 -11.25572 -11.11842 -10.48366 -10.34944 -10.28254 -8.10302 -6.19711 1.39113 1.39606 1.50532 2.43600 3.18493 3.53392 3.97622 4.06744 4.15510 4.46794 4.64403 4.67633 4.81355 4.90201 4.99259 5.04833 5.08143 5.13673 5.26210 5.35668 5.45982 5.53806 5.63784 5.70398 6.10252 6.14269 6.42304 6.94639 7.15242 7.46643 8.98007 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.061886 B = 0.012286 C = 0.011508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.333011 B = 2278.399267 C = 2432.516331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 O -0.575 6.575 4 C -0.130 4.130 5 C -0.111 4.111 6 C -0.098 4.098 7 C 0.050 3.950 8 H -0.005 1.005 9 C -0.540 4.540 10 H 0.050 0.950 11 C 0.011 3.989 12 N -0.920 5.920 13 Si 0.951 3.049 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.267 1.267 17 C -0.091 4.091 18 H 0.072 0.928 19 H 0.053 0.947 20 H 0.079 0.921 21 H 0.381 0.619 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 -0.229 -6.739 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.085 3.915 3 O -0.382 6.382 4 C -0.167 4.167 5 C -0.148 4.148 6 C -0.136 4.136 7 C 0.031 3.969 8 H 0.013 0.987 9 C -0.578 4.578 10 H 0.068 0.932 11 C -0.187 4.187 12 N -0.559 5.559 13 Si 0.776 3.224 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.192 1.192 17 C -0.128 4.128 18 H 0.091 0.909 19 H 0.072 0.928 20 H 0.097 0.903 21 H 0.229 0.771 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.068 -0.385 -6.190 10.986 hybrid contribution 0.630 -0.249 0.427 0.801 sum -8.438 -0.634 -5.763 10.238 Atomic orbital electron populations 1.22393 0.94007 1.03223 1.02736 1.21317 0.93078 0.81949 0.95141 1.86678 1.77837 1.23972 1.49750 1.22124 0.95286 1.01599 0.97703 1.21442 0.96309 0.99819 0.97233 1.21376 0.99456 0.97499 0.95272 1.18507 0.91082 0.94478 0.92798 0.98715 1.21685 0.92473 1.34329 1.09302 0.93182 1.25778 0.97535 0.96580 0.98840 1.70130 1.03306 1.39483 1.42997 0.85659 0.77995 0.79215 0.79513 1.19906 1.21021 1.19150 1.21533 0.97362 0.98403 0.95547 0.90879 0.92793 0.90255 0.77125 0.89615 0.90741 0.92052 0.93764 0.94669 0.94997 0.93187 0.94614 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.81 71.98 0.63 -3.54 16 2 C 0.13 4.23 0.98 -10.80 -0.01 4.22 16 3 O -0.58 -20.82 11.63 -148.98 -1.73 -22.55 16 4 C -0.13 -3.95 4.92 30.59 0.15 -3.80 16 5 C -0.11 -4.25 5.78 30.59 0.18 -4.07 16 6 C -0.10 -4.78 5.04 30.59 0.15 -4.63 16 7 C 0.05 2.67 1.82 -11.52 -0.02 2.65 16 8 H -0.01 -0.34 7.63 -2.39 -0.02 -0.36 16 9 C -0.54 -31.58 8.48 25.60 0.22 -31.36 16 10 H 0.05 2.86 7.77 -2.91 -0.02 2.84 16 11 C 0.01 0.65 5.20 84.66 0.44 1.09 16 12 N -0.92 -56.62 12.16 21.45 0.26 -56.36 16 13 Si 0.95 45.44 29.55 68.60 2.03 47.46 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 17 C -0.09 -3.96 4.17 30.61 0.13 -3.83 16 18 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 19 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 20 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 21 H 0.38 9.54 9.05 -74.06 -0.67 8.87 16 22 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.04 1.82 7.68 -2.39 -0.02 1.80 16 26 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.76 6.91 -2.39 -0.02 1.75 16 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -67.91 240.47 2.85 -65.05 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.43 Total: 9.68 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 1.87 Total: -43.29 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.26 Total: -56.36 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.73 Total: -22.55 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.91 2.85 -65.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126248.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.185 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds