Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99866 * 2 1 3 5 5 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 6 6 C 1.53002 * 109.46969 * 299.99553 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00060 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99774 * 7 6 5 9 9 C 1.50699 * 109.47265 * 180.02562 * 7 6 5 10 10 H 1.08003 * 119.99962 * 120.00155 * 9 7 6 11 11 C 1.37873 * 119.99861 * 299.99767 * 9 7 6 12 12 N 1.31522 * 120.00243 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99980 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46755 * 90.00221 * 13 11 9 15 15 H 1.48494 * 109.47308 * 209.99919 * 13 11 9 16 16 H 1.48496 * 109.47178 * 330.00271 * 13 11 9 17 17 C 1.52999 * 109.47317 * 119.99724 * 2 1 3 18 18 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 21 21 H 0.96696 * 114.00036 * 299.99911 * 3 2 1 22 22 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 24 24 H 1.09004 * 109.47552 * 59.99646 * 5 4 2 25 25 H 1.09004 * 109.47298 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.47067 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47312 * 299.99939 * 6 5 4 28 28 H 0.96992 * 120.00032 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.47486 * 180.02562 * 17 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 6 2.0329 -2.8738 2.4798 10 1 2.6537 -2.3485 3.1905 11 6 1.7003 -4.1938 2.6982 12 7 0.9446 -4.8336 1.8325 13 14 2.3242 -5.0742 4.2231 14 1 1.3466 -4.9036 5.3278 15 1 2.4894 -6.5199 3.9272 16 1 3.6323 -4.4988 4.6264 17 6 2.0400 -0.7212 1.2492 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.7211 1.8654 -0.7650 22 1 1.6768 -0.2074 -2.1391 23 1 3.1300 -0.7209 -1.2494 24 1 0.4400 -2.1638 -1.2492 25 1 1.8931 -2.6774 -2.1394 26 1 1.6764 -3.9125 0.0003 27 1 3.1301 -2.8850 0.0001 28 1 0.7110 -5.7623 1.9860 29 1 3.1300 -0.7208 1.2495 30 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126252.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = -79.513066 kcal Electronic energy + Delta-G solvation = -11910.658217 eV Core-core repulsion = 9897.679833 eV Total energy + Delta-G solvation = -2012.978384 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.82063 -35.12209 -32.59397 -30.02225 -29.47067 -26.11683 -24.82474 -21.22866 -20.79738 -17.89706 -16.75369 -15.77333 -14.61087 -14.36397 -14.01135 -13.39477 -13.03730 -12.38198 -11.98923 -11.73342 -11.45139 -11.12514 -10.95360 -10.88713 -10.65051 -10.11784 -10.00718 -9.74217 -9.65516 -9.19982 -9.00627 -8.56461 -8.25391 -5.96423 -4.01891 3.32367 3.38945 3.42946 4.44658 4.80413 5.32623 5.35585 5.45189 5.69899 5.93102 5.99616 6.12607 6.39049 6.46873 6.49694 6.60018 6.68191 6.75652 6.85921 6.94179 7.17875 7.28287 7.53546 7.78158 8.03910 8.11741 8.20586 8.49941 9.01863 9.62419 11.09441 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.062226 B = 0.012357 C = 0.011412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.862633 B = 2265.320284 C = 2452.957259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.125 3.875 3 O -0.569 6.569 4 C -0.136 4.136 5 C -0.119 4.119 6 C -0.114 4.114 7 C 0.052 3.948 8 H 0.031 0.969 9 C -0.512 4.512 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.090 4.090 18 H 0.080 0.920 19 H 0.043 0.957 20 H 0.056 0.944 21 H 0.362 0.638 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.034 0.966 28 H 0.259 0.741 29 H 0.052 0.948 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.302 6.082 -5.274 8.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.086 3.914 3 O -0.374 6.374 4 C -0.173 4.173 5 C -0.156 4.156 6 C -0.151 4.151 7 C 0.033 3.967 8 H 0.049 0.951 9 C -0.550 4.550 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.128 4.128 18 H 0.099 0.901 19 H 0.062 0.938 20 H 0.075 0.925 21 H 0.207 0.793 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.104 5.695 -4.732 7.405 hybrid contribution 0.051 -0.361 0.208 0.420 sum -0.054 5.333 -4.525 6.994 Atomic orbital electron populations 1.22538 0.96488 1.03516 1.00744 1.21423 0.92425 0.80692 0.96890 1.86591 1.77519 1.24496 1.48746 1.22160 1.01018 0.97573 0.96593 1.21659 1.00337 0.94052 0.99597 1.21665 0.98441 1.02400 0.92643 1.18693 0.96362 0.87963 0.93652 0.95117 1.21214 1.31376 0.96205 1.06193 0.92713 1.24951 0.95098 0.97498 0.96440 1.69875 1.37105 1.10824 1.35267 0.86621 0.79295 0.78806 0.83451 1.20744 1.21290 1.19951 1.21615 1.00149 0.97575 0.93470 0.90128 0.93820 0.92504 0.79253 0.93571 0.92027 0.92546 0.93770 0.88920 0.94751 0.93085 0.92896 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 8.12 37.16 0.30 -2.71 16 2 C 0.13 2.33 1.15 -90.63 -0.10 2.22 16 3 O -0.57 -9.85 12.98 -35.23 -0.46 -10.31 16 4 C -0.14 -2.37 5.07 -26.74 -0.14 -2.51 16 5 C -0.12 -2.29 5.65 -26.73 -0.15 -2.44 16 6 C -0.11 -2.68 4.98 -26.73 -0.13 -2.81 16 7 C 0.05 1.29 1.83 -91.77 -0.17 1.12 16 8 H 0.03 0.82 6.43 -51.93 -0.33 0.48 16 9 C -0.51 -14.21 8.56 -34.44 -0.29 -14.50 16 10 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 11 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 12 N -0.89 -25.36 11.32 55.43 0.63 -24.73 16 13 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.09 -2.01 4.32 -26.73 -0.12 -2.13 16 18 H 0.08 1.50 4.81 -51.93 -0.25 1.26 16 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.36 4.55 9.05 45.56 0.41 4.97 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 1.07 6.43 -51.93 -0.33 0.74 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 234.11 15.07 3.53 3.53 Total: -1.00 -28.87 234.11 -5.96 -34.83 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -3.74 Total: 2.42 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -0.89 Total: -22.15 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.63 Total: -24.73 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.46 Total: -10.31 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.87 -5.96 -34.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126252.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.681 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds