Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99866 * 2 1 3 5 5 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 6 6 C 1.53002 * 109.46969 * 299.99553 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00060 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99774 * 7 6 5 9 9 C 1.50699 * 109.47265 * 180.02562 * 7 6 5 10 10 H 1.08003 * 119.99962 * 120.00155 * 9 7 6 11 11 C 1.37873 * 119.99861 * 299.99767 * 9 7 6 12 12 N 1.31522 * 120.00243 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99980 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46755 * 90.00221 * 13 11 9 15 15 H 1.48494 * 109.47308 * 209.99919 * 13 11 9 16 16 H 1.48496 * 109.47178 * 330.00271 * 13 11 9 17 17 C 1.52999 * 109.47317 * 119.99724 * 2 1 3 18 18 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 21 21 H 0.96696 * 114.00036 * 299.99911 * 3 2 1 22 22 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 24 24 H 1.09004 * 109.47552 * 59.99646 * 5 4 2 25 25 H 1.09004 * 109.47298 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.47067 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47312 * 299.99939 * 6 5 4 28 28 H 0.96992 * 120.00032 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.47486 * 180.02562 * 17 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 6 2.0329 -2.8738 2.4798 10 1 2.6537 -2.3485 3.1905 11 6 1.7003 -4.1938 2.6982 12 7 0.9446 -4.8336 1.8325 13 14 2.3242 -5.0742 4.2231 14 1 1.3466 -4.9036 5.3278 15 1 2.4894 -6.5199 3.9272 16 1 3.6323 -4.4988 4.6264 17 6 2.0400 -0.7212 1.2492 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.7211 1.8654 -0.7650 22 1 1.6768 -0.2074 -2.1391 23 1 3.1300 -0.7209 -1.2494 24 1 0.4400 -2.1638 -1.2492 25 1 1.8931 -2.6774 -2.1394 26 1 1.6764 -3.9125 0.0003 27 1 3.1301 -2.8850 0.0001 28 1 0.7110 -5.7623 1.9860 29 1 3.1300 -0.7208 1.2495 30 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126252.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = -98.899439 kcal Electronic energy + Delta-G solvation = -11911.498874 eV Core-core repulsion = 9897.679833 eV Total energy + Delta-G solvation = -2013.819040 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.38623 -36.74813 -34.52436 -31.74118 -31.13462 -27.63402 -26.84411 -22.91796 -22.52367 -19.56337 -18.65509 -17.39538 -16.51964 -16.00468 -15.52363 -15.14326 -14.52854 -14.29945 -13.66814 -13.36519 -13.03178 -12.82833 -12.66653 -12.54439 -12.52352 -11.81218 -11.76930 -11.53360 -11.35532 -11.07109 -10.66200 -10.42886 -10.28839 -8.08716 -6.21925 1.40044 1.40881 1.51142 2.42858 3.17623 3.42852 3.89670 3.99877 4.21981 4.46364 4.57228 4.67011 4.77389 4.84837 4.98664 5.05270 5.07471 5.14193 5.18402 5.40239 5.46124 5.51136 5.61928 5.70182 6.05129 6.18463 6.41162 6.88014 7.04114 7.45449 8.95362 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.062226 B = 0.012357 C = 0.011412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.862633 B = 2265.320284 C = 2452.957259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 O -0.578 6.578 4 C -0.129 4.129 5 C -0.113 4.113 6 C -0.108 4.108 7 C 0.052 3.948 8 H 0.010 0.990 9 C -0.540 4.540 10 H 0.045 0.955 11 C 0.016 3.984 12 N -0.913 5.913 13 Si 0.951 3.049 14 H -0.275 1.275 15 H -0.281 1.281 16 H -0.272 1.272 17 C -0.088 4.088 18 H 0.060 0.940 19 H 0.080 0.920 20 H 0.050 0.950 21 H 0.387 0.613 22 H 0.087 0.913 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.021 0.979 28 H 0.261 0.739 29 H 0.039 0.961 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 6.970 -6.263 9.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.091 3.909 3 O -0.386 6.386 4 C -0.166 4.166 5 C -0.150 4.150 6 C -0.147 4.147 7 C 0.034 3.966 8 H 0.028 0.972 9 C -0.578 4.578 10 H 0.063 0.937 11 C -0.183 4.183 12 N -0.553 5.553 13 Si 0.777 3.223 14 H -0.201 1.201 15 H -0.206 1.206 16 H -0.197 1.197 17 C -0.125 4.125 18 H 0.079 0.921 19 H 0.099 0.901 20 H 0.069 0.931 21 H 0.237 0.763 22 H 0.105 0.895 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.143 6.603 -5.736 8.748 hybrid contribution 0.062 -0.607 0.527 0.806 sum -0.081 5.996 -5.209 7.943 Atomic orbital electron populations 1.22467 0.95292 1.02692 1.02371 1.21161 0.93167 0.81319 0.95266 1.86529 1.77679 1.23819 1.50555 1.22101 1.00744 0.96227 0.97574 1.21563 1.00479 0.95164 0.97800 1.21490 0.97487 1.01161 0.94527 1.18607 0.94940 0.89693 0.93398 0.97214 1.21593 1.31726 0.97015 1.07440 0.93694 1.25676 0.95272 0.98148 0.99223 1.69997 1.37684 1.11036 1.36574 0.85666 0.78808 0.77761 0.80098 1.20108 1.20595 1.19678 1.21459 0.99143 0.96475 0.95465 0.92118 0.90075 0.93057 0.76346 0.89467 0.92508 0.92246 0.91785 0.92021 0.95967 0.92968 0.94248 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.47 8.12 71.98 0.58 -4.89 16 2 C 0.13 4.59 1.15 -10.80 -0.01 4.58 16 3 O -0.58 -18.25 12.98 -148.98 -1.93 -20.19 16 4 C -0.13 -4.10 5.07 30.59 0.16 -3.95 16 5 C -0.11 -4.14 5.65 30.59 0.17 -3.96 16 6 C -0.11 -5.18 4.98 30.59 0.15 -5.03 16 7 C 0.05 2.65 1.83 -11.54 -0.02 2.63 16 8 H 0.01 0.54 6.43 -2.39 -0.02 0.52 16 9 C -0.54 -30.78 8.56 25.60 0.22 -30.56 16 10 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 11 C 0.02 0.87 5.30 84.65 0.45 1.32 16 12 N -0.91 -52.89 11.32 21.45 0.24 -52.64 16 13 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C -0.09 -3.92 4.32 30.60 0.13 -3.79 16 18 H 0.06 2.20 4.81 -2.39 -0.01 2.18 16 19 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 20 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 21 H 0.39 8.01 9.05 -74.06 -0.67 7.34 16 22 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.06 2.16 6.43 -2.39 -0.02 2.14 16 25 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 27 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.44 234.11 2.61 -59.82 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.45 Total: 10.20 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 1.83 Total: -43.64 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.24 Total: -52.64 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -1.93 Total: -20.19 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -62.44 2.61 -59.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126252.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.075 kcal (2) G-P(sol) polarization free energy of solvation -62.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds