Wall clock time and date at job start Mon Mar 30 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47016 * 2 1 4 4 C 1.52998 * 109.46880 * 120.00293 * 2 1 3 5 5 C 1.52995 * 109.47401 * 59.99894 * 4 2 1 6 6 C 1.53000 * 109.47032 * 59.99884 * 5 4 2 7 7 C 1.53001 * 109.47246 * 299.99751 * 6 5 4 8 8 H 1.08995 * 109.47283 * 300.00525 * 7 6 5 9 9 C 1.50700 * 109.47304 * 179.97438 * 7 6 5 10 10 H 1.08001 * 120.00168 * 245.44293 * 9 7 6 11 11 C 1.37876 * 119.99556 * 65.44901 * 9 7 6 12 12 N 1.31510 * 120.00244 * 9.57209 * 11 9 7 13 13 Si 1.86801 * 119.99734 * 189.57294 * 11 9 7 14 14 H 1.48499 * 109.47372 * 94.99233 * 13 11 9 15 15 H 1.48500 * 109.47064 * 214.99397 * 13 11 9 16 16 H 1.48506 * 109.47240 * 334.98967 * 13 11 9 17 17 C 1.52996 * 109.46770 * 240.00098 * 2 1 3 18 18 H 1.09001 * 109.46838 * 300.00246 * 1 2 3 19 19 H 1.09004 * 109.47124 * 59.99530 * 1 2 3 20 20 H 1.08995 * 109.47186 * 179.97438 * 1 2 3 21 21 H 0.96706 * 114.00047 * 60.00181 * 3 2 1 22 22 H 1.09001 * 109.46945 * 299.99395 * 4 2 1 23 23 H 1.09006 * 109.46867 * 180.02562 * 4 2 1 24 24 H 1.08994 * 109.47341 * 179.97438 * 5 4 2 25 25 H 1.08996 * 109.47302 * 300.00053 * 5 4 2 26 26 H 1.08995 * 109.47408 * 60.00199 * 6 5 4 27 27 H 1.09003 * 109.47344 * 180.02562 * 6 5 4 28 28 H 0.96999 * 119.99779 * 179.97438 * 12 11 9 29 29 H 1.09005 * 109.47441 * 60.00002 * 17 2 1 30 30 H 1.09005 * 109.47122 * 180.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0400 -2.8850 -0.0001 7 6 1.5299 -2.1638 -1.2493 8 1 0.4400 -2.1637 -1.2493 9 6 2.0328 -2.8738 -2.4798 10 1 2.7241 -2.3777 -3.1449 11 6 1.6101 -4.1567 -2.7564 12 7 0.6317 -4.6914 -2.0592 13 14 2.4274 -5.1352 -4.1217 14 1 3.4961 -5.9907 -3.5462 15 1 1.4153 -5.9908 -4.7916 16 1 3.0205 -4.2019 -5.1130 17 6 2.0399 -0.7212 -1.2492 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.7210 1.8653 0.7651 22 1 1.6767 -0.2074 2.1392 23 1 3.1300 -0.7209 1.2494 24 1 1.8936 -2.6777 2.1389 25 1 0.4400 -2.1638 1.2492 26 1 3.1299 -2.8850 -0.0001 27 1 1.6763 -3.9125 -0.0004 28 1 0.3342 -5.5939 -2.2541 29 1 1.6766 -0.2074 -2.1393 30 1 3.1300 -0.7217 -1.2491 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126254.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:23 Heat of formation + Delta-G solvation = -80.864205 kcal Electronic energy + Delta-G solvation = -11899.739985 eV Core-core repulsion = 9886.703011 eV Total energy + Delta-G solvation = -2013.036974 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.83574 -35.12377 -32.59270 -30.02424 -29.54077 -26.14430 -24.80265 -21.25466 -20.83760 -17.92328 -16.75532 -15.78283 -14.61639 -14.36081 -14.02122 -13.42571 -13.05169 -12.35878 -11.99722 -11.78010 -11.47355 -11.12988 -10.96570 -10.90624 -10.68575 -10.15766 -10.05344 -9.77422 -9.69684 -9.11552 -9.03707 -8.61554 -8.25344 -5.99886 -4.00392 3.32461 3.39697 3.43390 4.45406 4.79576 5.31289 5.34243 5.44063 5.68740 5.91553 5.96848 6.10511 6.37632 6.42904 6.47693 6.57713 6.67416 6.71873 6.83543 6.92752 7.13739 7.23484 7.45500 7.76705 8.00915 8.04863 8.15184 8.49047 9.03576 9.62593 11.09381 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.061943 B = 0.012261 C = 0.011510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.922490 B = 2283.122717 C = 2432.042209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.125 3.875 3 O -0.568 6.568 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.050 3.950 8 H 0.038 0.962 9 C -0.514 4.514 10 H 0.055 0.945 11 C 0.064 3.936 12 N -0.889 5.889 13 Si 0.886 3.114 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.090 4.090 18 H 0.043 0.957 19 H 0.056 0.944 20 H 0.080 0.920 21 H 0.362 0.638 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.259 0.741 29 H 0.052 0.948 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 5.965 5.772 8.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.085 3.915 3 O -0.373 6.373 4 C -0.173 4.173 5 C -0.157 4.157 6 C -0.145 4.145 7 C 0.031 3.969 8 H 0.056 0.944 9 C -0.553 4.553 10 H 0.073 0.927 11 C -0.138 4.138 12 N -0.528 5.528 13 Si 0.714 3.286 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.128 4.128 18 H 0.062 0.938 19 H 0.075 0.925 20 H 0.099 0.901 21 H 0.208 0.792 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.432 5.594 5.212 7.658 hybrid contribution 0.158 -0.470 -0.118 0.510 sum 0.590 5.124 5.094 7.249 Atomic orbital electron populations 1.22540 0.96426 1.03580 1.00765 1.21429 0.92480 0.80711 0.96833 1.86593 1.77507 1.24473 1.48751 1.22151 1.01023 0.97415 0.96716 1.21643 1.00497 0.94195 0.99332 1.21599 0.98561 1.01012 0.93353 1.18710 0.96960 0.87943 0.93257 0.94354 1.21182 1.26939 0.99185 1.07952 0.92684 1.24940 0.94574 0.97923 0.96329 1.69964 1.26076 1.15373 1.41365 0.86670 0.79377 0.80230 0.82296 1.20754 1.21353 1.19883 1.21611 1.00062 0.97570 0.93533 0.93827 0.92466 0.90076 0.79244 0.93467 0.91993 0.93709 0.92364 0.94461 0.90825 0.93095 0.92875 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 8.12 37.16 0.30 -2.72 16 2 C 0.13 2.31 1.15 -90.62 -0.10 2.21 16 3 O -0.57 -9.79 12.98 -35.23 -0.46 -10.25 16 4 C -0.14 -2.33 5.07 -26.73 -0.14 -2.47 16 5 C -0.12 -2.25 5.65 -26.73 -0.15 -2.40 16 6 C -0.11 -2.48 5.04 -26.73 -0.13 -2.62 16 7 C 0.05 1.23 1.69 -91.77 -0.16 1.08 16 8 H 0.04 1.02 6.37 -51.93 -0.33 0.69 16 9 C -0.51 -14.28 8.48 -34.44 -0.29 -14.57 16 10 H 0.05 1.53 7.77 -52.49 -0.41 1.12 16 11 C 0.06 1.77 5.20 -17.82 -0.09 1.68 16 12 N -0.89 -25.49 12.16 55.43 0.67 -24.81 16 13 Si 0.89 21.44 29.55 -169.99 -5.02 16.42 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.09 -1.99 4.32 -26.73 -0.12 -2.11 16 18 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 19 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 20 H 0.08 1.52 4.81 -51.93 -0.25 1.27 16 21 H 0.36 4.52 9.05 45.56 0.41 4.93 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.10 6.43 -51.93 -0.33 0.76 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 235.51 15.07 3.55 3.55 Total: -1.00 -29.04 235.51 -5.92 -34.96 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.79 Total: 2.06 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -0.88 Total: -21.92 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.67 Total: -24.81 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.46 Total: -10.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.04 -5.92 -34.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126254.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.903 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds