Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99669 * 2 1 3 5 5 C 1.53005 * 109.47159 * 60.00365 * 4 2 1 6 6 C 1.52997 * 109.47452 * 59.99536 * 5 4 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 4 8 8 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 9 9 H 1.09002 * 109.47153 * 180.02562 * 8 2 1 10 10 C 1.50699 * 109.47078 * 60.00337 * 8 2 1 11 11 H 1.07999 * 120.00019 * 359.97438 * 10 8 2 12 12 C 1.37877 * 120.00129 * 180.02562 * 10 8 2 13 13 N 1.31519 * 119.99723 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99900 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47312 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46948 * 119.99892 * 14 12 10 17 17 H 1.48500 * 109.46809 * 239.99811 * 14 12 10 18 18 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 20 20 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 21 21 H 0.96698 * 114.00355 * 60.00121 * 3 2 1 22 22 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 23 23 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.46935 * 299.99411 * 5 4 2 25 25 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 26 26 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.46695 * 59.99734 * 6 5 4 28 28 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 29 29 H 1.09004 * 109.46733 * 179.97438 * 7 6 5 30 30 H 0.97003 * 119.99231 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0399 -2.8851 0.0001 7 6 1.5300 -2.1638 -1.2491 8 6 2.0401 -0.7213 -1.2492 9 1 3.1301 -0.7217 -1.2489 10 6 1.5378 -0.0110 -2.4797 11 1 0.9166 0.8669 -2.3806 12 6 1.8704 -0.4824 -3.7319 13 7 2.6265 -1.5517 -3.8525 14 14 1.2472 0.3978 -5.2572 15 1 0.4219 1.5643 -4.8531 16 1 2.4020 0.8643 -6.0660 17 1 0.4220 -0.5358 -6.0649 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.7211 1.8653 0.7650 22 1 1.6766 -0.2073 2.1393 23 1 3.1300 -0.7216 1.2491 24 1 0.4399 -2.1637 1.2493 25 1 1.8936 -2.6776 2.1392 26 1 1.6770 -3.9128 0.0004 27 1 3.1299 -2.8850 0.0002 28 1 0.4400 -2.1638 -1.2491 29 1 1.8937 -2.6774 -2.1391 30 1 2.8602 -1.8835 -4.7335 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138252.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -74.251080 kcal Electronic energy + Delta-G solvation = -12106.611527 eV Core-core repulsion = 10093.861320 eV Total energy + Delta-G solvation = -2012.750207 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.70877 -34.65289 -32.81660 -29.79387 -29.36919 -26.23884 -24.42827 -21.36689 -20.74243 -17.81976 -16.39169 -15.63712 -14.90402 -14.07046 -13.78640 -13.29414 -12.93446 -12.20251 -12.13981 -11.54745 -11.29927 -10.99556 -10.83861 -10.72257 -10.45855 -10.33878 -10.09496 -9.75571 -9.42470 -9.20329 -8.80943 -8.42581 -8.18356 -5.87591 -3.89921 3.36340 3.44083 3.49203 4.53526 5.11540 5.45719 5.49909 5.55442 5.84034 6.04541 6.09170 6.10769 6.32013 6.37994 6.42827 6.58620 6.64005 6.78703 6.83546 7.09367 7.16302 7.28379 7.50759 7.85054 8.02105 8.18599 8.54081 8.70593 9.12218 9.72129 11.18820 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.048879 B = 0.015746 C = 0.013358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.706947 B = 1777.779926 C = 2095.592306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.134 3.866 3 O -0.549 6.549 4 C -0.142 4.142 5 C -0.113 4.113 6 C -0.123 4.123 7 C -0.111 4.111 8 C 0.066 3.934 9 H 0.029 0.971 10 C -0.490 4.490 11 H 0.059 0.941 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.889 3.111 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.287 1.287 18 H 0.063 0.937 19 H 0.030 0.970 20 H 0.069 0.931 21 H 0.349 0.651 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.095 0.905 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 -0.215 7.929 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.094 3.906 3 O -0.352 6.352 4 C -0.180 4.180 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.149 4.149 8 C 0.047 3.953 9 H 0.047 0.953 10 C -0.528 4.528 11 H 0.077 0.923 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.717 3.283 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.213 1.213 18 H 0.082 0.918 19 H 0.049 0.951 20 H 0.088 0.912 21 H 0.192 0.808 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.590 -0.527 7.214 7.683 hybrid contribution -0.549 0.569 -0.274 0.836 sum -3.138 0.041 6.940 7.617 Atomic orbital electron populations 1.22468 0.97241 1.02018 1.00651 1.21458 0.91982 0.81265 0.95940 1.86774 1.76885 1.24075 1.47441 1.22249 1.01109 0.96530 0.98076 1.21522 1.00376 0.95297 0.97869 1.21671 1.00326 0.97910 0.96122 1.21687 0.98567 0.97873 0.96759 1.18583 0.96443 0.90623 0.89626 0.95315 1.21194 1.30449 1.11089 0.90104 0.92267 1.24967 0.95427 0.95204 0.98887 1.69891 1.37630 1.23248 1.22906 0.86579 0.78560 0.79710 0.83408 1.19889 1.21220 1.21296 0.91834 0.95119 0.91213 0.80786 0.93591 0.92045 0.92313 0.93538 0.93774 0.92905 0.94280 0.88630 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 7.87 37.16 0.29 -2.92 16 2 C 0.13 2.83 0.80 -90.62 -0.07 2.76 16 3 O -0.55 -11.78 12.57 -35.23 -0.44 -12.22 16 4 C -0.14 -2.56 5.07 -26.73 -0.14 -2.69 16 5 C -0.11 -1.93 5.65 -26.73 -0.15 -2.08 16 6 C -0.12 -2.38 5.92 -26.73 -0.16 -2.54 16 7 C -0.11 -2.61 4.71 -26.73 -0.13 -2.73 16 8 C 0.07 1.67 1.63 -91.77 -0.15 1.52 16 9 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 10 C -0.49 -13.78 7.50 -34.44 -0.26 -14.04 16 11 H 0.06 1.69 6.66 -52.49 -0.35 1.34 16 12 C 0.05 1.55 5.30 -17.82 -0.09 1.46 16 13 N -0.90 -26.12 11.32 55.43 0.63 -25.50 16 14 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H 0.06 1.20 4.81 -51.93 -0.25 0.95 16 19 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 20 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 21 H 0.35 5.60 9.05 45.56 0.41 6.02 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.90 6.43 -51.93 -0.33 0.56 16 29 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 230.55 15.07 3.47 3.47 Total: -1.00 -29.92 230.55 -5.82 -35.74 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -3.61 Total: 2.81 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -0.85 Total: -21.27 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.63 Total: -25.50 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.44 Total: -12.22 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.92 -5.82 -35.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138252.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.511 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds