Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99669 * 2 1 3 5 5 C 1.53005 * 109.47159 * 60.00365 * 4 2 1 6 6 C 1.52997 * 109.47452 * 59.99536 * 5 4 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 4 8 8 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 9 9 H 1.09002 * 109.47153 * 180.02562 * 8 2 1 10 10 C 1.50699 * 109.47078 * 60.00337 * 8 2 1 11 11 H 1.07999 * 120.00019 * 359.97438 * 10 8 2 12 12 C 1.37877 * 120.00129 * 180.02562 * 10 8 2 13 13 N 1.31519 * 119.99723 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99900 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47312 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46948 * 119.99892 * 14 12 10 17 17 H 1.48500 * 109.46809 * 239.99811 * 14 12 10 18 18 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 20 20 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 21 21 H 0.96698 * 114.00355 * 60.00121 * 3 2 1 22 22 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 23 23 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.46935 * 299.99411 * 5 4 2 25 25 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 26 26 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.46695 * 59.99734 * 6 5 4 28 28 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 29 29 H 1.09004 * 109.46733 * 179.97438 * 7 6 5 30 30 H 0.97003 * 119.99231 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0399 -2.8851 0.0001 7 6 1.5300 -2.1638 -1.2491 8 6 2.0401 -0.7213 -1.2492 9 1 3.1301 -0.7217 -1.2489 10 6 1.5378 -0.0110 -2.4797 11 1 0.9166 0.8669 -2.3806 12 6 1.8704 -0.4824 -3.7319 13 7 2.6265 -1.5517 -3.8525 14 14 1.2472 0.3978 -5.2572 15 1 0.4219 1.5643 -4.8531 16 1 2.4020 0.8643 -6.0660 17 1 0.4220 -0.5358 -6.0649 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.7211 1.8653 0.7650 22 1 1.6766 -0.2073 2.1393 23 1 3.1300 -0.7216 1.2491 24 1 0.4399 -2.1637 1.2493 25 1 1.8936 -2.6776 2.1392 26 1 1.6770 -3.9128 0.0004 27 1 3.1299 -2.8850 0.0002 28 1 0.4400 -2.1638 -1.2491 29 1 1.8937 -2.6774 -2.1391 30 1 2.8602 -1.8835 -4.7335 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138252.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -95.036638 kcal Electronic energy + Delta-G solvation = -12107.512857 eV Core-core repulsion = 10093.861320 eV Total energy + Delta-G solvation = -2013.651537 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.36159 -36.32193 -34.83351 -31.52864 -31.08780 -27.93419 -26.35256 -23.10844 -22.36724 -19.52474 -18.38540 -17.40358 -16.79127 -15.83482 -15.38960 -15.01816 -14.44238 -14.05945 -13.79153 -13.31228 -12.95865 -12.80448 -12.66151 -12.48697 -12.24659 -11.98238 -11.82341 -11.53747 -11.15992 -10.98386 -10.65645 -10.29294 -10.18294 -8.03496 -6.13584 1.38224 1.40033 1.51753 2.45534 3.20793 3.66332 4.03972 4.10843 4.36001 4.48857 4.56097 4.60612 4.78025 4.90668 4.95925 5.07472 5.10720 5.23505 5.31197 5.41374 5.50720 5.61858 5.65942 5.76220 6.03181 6.17908 6.46366 6.94988 7.26162 7.52520 9.01015 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.048879 B = 0.015746 C = 0.013358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.706947 B = 1777.779926 C = 2095.592306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 O -0.576 6.576 4 C -0.136 4.136 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.104 4.104 8 C 0.061 3.939 9 H -0.021 1.021 10 C -0.505 4.505 11 H 0.050 0.950 12 C 0.004 3.996 13 N -0.923 5.923 14 Si 0.949 3.051 15 H -0.270 1.270 16 H -0.285 1.285 17 H -0.278 1.278 18 H 0.067 0.933 19 H 0.068 0.932 20 H 0.042 0.958 21 H 0.374 0.626 22 H 0.083 0.917 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 -0.075 9.531 10.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.090 3.910 3 O -0.383 6.383 4 C -0.174 4.174 5 C -0.145 4.145 6 C -0.157 4.157 7 C -0.142 4.142 8 C 0.042 3.958 9 H -0.003 1.003 10 C -0.544 4.544 11 H 0.068 0.932 12 C -0.193 4.193 13 N -0.564 5.564 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.204 1.204 18 H 0.086 0.914 19 H 0.087 0.913 20 H 0.061 0.939 21 H 0.221 0.779 22 H 0.101 0.899 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.815 -0.378 8.836 9.631 hybrid contribution -0.134 0.561 -0.776 0.967 sum -3.949 0.183 8.059 8.977 Atomic orbital electron populations 1.22360 0.95555 1.02477 1.01198 1.21349 0.93165 0.81186 0.95279 1.86698 1.77446 1.24680 1.49442 1.22180 1.00301 0.97272 0.97657 1.21512 1.01180 0.94365 0.97427 1.21607 0.99542 0.98995 0.95546 1.21479 0.98422 0.96819 0.97517 1.18549 0.93398 0.92447 0.91400 1.00267 1.21494 1.30241 1.10949 0.91667 0.93227 1.25735 0.95797 0.95985 1.01811 1.70039 1.38549 1.24358 1.23427 0.85630 0.78055 0.78793 0.79937 1.19446 1.21080 1.20386 0.91374 0.91273 0.93917 0.77947 0.89859 0.93474 0.90904 0.90229 0.91659 0.94216 0.94036 0.92443 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.76 7.87 71.98 0.57 -5.19 16 2 C 0.13 5.35 0.80 -10.79 -0.01 5.34 16 3 O -0.58 -24.18 12.57 -148.98 -1.87 -26.05 16 4 C -0.14 -4.52 5.07 30.60 0.16 -4.36 16 5 C -0.11 -3.26 5.65 30.60 0.17 -3.09 16 6 C -0.12 -4.48 5.92 30.59 0.18 -4.30 16 7 C -0.10 -4.96 4.71 30.60 0.14 -4.82 16 8 C 0.06 3.15 1.63 -11.54 -0.02 3.13 16 9 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 10 C -0.51 -29.11 7.50 25.60 0.19 -28.92 16 11 H 0.05 2.88 6.66 -2.91 -0.02 2.87 16 12 C 0.00 0.21 5.30 84.65 0.45 0.66 16 13 N -0.92 -55.50 11.32 21.45 0.24 -55.26 16 14 Si 0.95 45.83 29.54 68.60 2.03 47.85 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H 0.07 2.38 4.81 -2.39 -0.01 2.37 16 19 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 20 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 21 H 0.37 11.11 9.05 -74.06 -0.67 10.44 16 22 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 2.05 6.43 -2.39 -0.02 2.03 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.90 6.43 -2.39 -0.02 1.89 16 29 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 30 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -66.31 230.55 2.68 -63.63 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.45 Total: 11.37 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 1.83 Total: -41.54 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.24 Total: -55.26 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -1.87 Total: -26.05 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -66.31 2.68 -63.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138252.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.404 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds