Wall clock time and date at job start Mon Mar 30 2020 02:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00018 * 2 1 3 5 5 C 1.52996 * 109.47131 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47518 * 300.00172 * 5 4 2 7 7 C 1.53005 * 109.46632 * 59.99681 * 6 5 4 8 8 C 1.52996 * 109.47245 * 300.00027 * 7 6 5 9 9 H 1.09001 * 109.47372 * 300.00032 * 8 7 6 10 10 C 1.50703 * 109.46946 * 180.02562 * 8 7 6 11 11 H 1.07995 * 120.00280 * 240.00078 * 10 8 7 12 12 C 1.37880 * 119.99788 * 60.00145 * 10 8 7 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 119.99600 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46918 * 90.00136 * 14 12 10 16 16 H 1.48500 * 109.47037 * 209.99668 * 14 12 10 17 17 H 1.48498 * 109.47434 * 330.00164 * 14 12 10 18 18 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 19 19 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 20 20 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 21 21 H 0.96704 * 113.99354 * 60.00285 * 3 2 1 22 22 H 1.08996 * 109.46952 * 300.00302 * 4 2 1 23 23 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 24 24 H 1.09000 * 109.47054 * 180.02562 * 5 4 2 25 25 H 1.09001 * 109.46997 * 60.00426 * 5 4 2 26 26 H 1.08992 * 109.47098 * 300.00298 * 6 5 4 27 27 H 1.08992 * 109.47132 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.46832 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47420 * 60.00585 * 7 6 5 30 30 H 0.96996 * 119.99914 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0796 -1.4434 -0.0003 7 6 3.5695 -0.7220 -1.2496 8 6 2.0395 -0.7216 -1.2492 9 1 1.6758 -1.7491 -1.2491 10 6 1.5372 -0.0116 -2.4800 11 1 0.9166 0.8667 -2.3813 12 6 1.8699 -0.4835 -3.7321 13 7 2.6260 -1.5528 -3.8524 14 14 1.2466 0.3962 -5.2576 15 1 2.2246 1.4376 -5.6628 16 1 1.0813 -0.5837 -6.3612 17 1 -0.0615 1.0338 -4.9617 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.7209 1.8653 0.7651 22 1 1.6767 -0.2074 2.1392 23 1 1.6767 -1.7489 1.2491 24 1 3.9333 -1.2360 2.1387 25 1 3.9337 0.3057 1.2487 26 1 3.7159 -2.4708 -0.0002 27 1 5.1695 -1.4433 -0.0007 28 1 3.9322 -1.2363 -2.1396 29 1 3.9332 0.3055 -1.2498 30 1 2.8597 -1.8849 -4.7332 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138257.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:14 Heat of formation + Delta-G solvation = -96.640508 kcal Electronic energy + Delta-G solvation = -12100.024353 eV Core-core repulsion = 10086.303268 eV Total energy + Delta-G solvation = -2013.721086 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.20704 -35.90526 -34.76246 -32.15089 -31.19849 -27.62861 -26.23861 -23.02003 -21.81965 -20.37272 -18.39704 -16.89821 -16.75272 -15.76189 -15.34331 -14.93845 -14.28759 -14.20968 -13.81378 -13.39774 -12.89028 -12.75127 -12.54569 -12.49338 -12.11325 -12.07057 -11.77112 -11.68725 -11.35676 -10.89487 -10.50189 -10.33948 -10.09576 -8.02037 -6.11797 1.39542 1.40929 1.50390 2.46241 3.22779 3.75551 4.06771 4.17287 4.20164 4.54348 4.59520 4.69752 4.84186 4.95083 4.98869 5.07662 5.09213 5.24006 5.35121 5.47277 5.51607 5.54803 5.70192 5.78463 6.05172 6.20642 6.49020 6.96428 7.30823 7.53985 9.02015 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.049004 B = 0.015749 C = 0.013351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.245482 B = 1777.484698 C = 2096.790470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 O -0.563 6.563 4 C -0.137 4.137 5 C -0.104 4.104 6 C -0.117 4.117 7 C -0.102 4.102 8 C 0.060 3.940 9 H 0.003 0.997 10 C -0.505 4.505 11 H 0.050 0.950 12 C 0.004 3.996 13 N -0.922 5.922 14 Si 0.948 3.052 15 H -0.281 1.281 16 H -0.284 1.284 17 H -0.269 1.269 18 H 0.053 0.947 19 H 0.071 0.929 20 H 0.044 0.956 21 H 0.371 0.629 22 H 0.083 0.917 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 2.027 9.596 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.094 3.906 3 O -0.369 6.369 4 C -0.175 4.175 5 C -0.142 4.142 6 C -0.154 4.154 7 C -0.140 4.140 8 C 0.042 3.958 9 H 0.021 0.979 10 C -0.543 4.543 11 H 0.068 0.932 12 C -0.193 4.193 13 N -0.563 5.563 14 Si 0.774 3.226 15 H -0.207 1.207 16 H -0.210 1.210 17 H -0.194 1.194 18 H 0.072 0.928 19 H 0.090 0.910 20 H 0.063 0.937 21 H 0.217 0.783 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.957 1.713 8.897 9.110 hybrid contribution -0.446 0.374 -0.803 0.992 sum -1.403 2.087 8.093 8.475 Atomic orbital electron populations 1.22312 0.96244 1.01768 1.01487 1.21270 0.92189 0.81988 0.95191 1.86707 1.77070 1.23959 1.49147 1.22183 0.96575 1.01009 0.97700 1.21385 0.95330 1.00511 0.96952 1.21572 0.99297 0.98709 0.95858 1.21352 0.98194 0.97497 0.96939 1.18586 0.92688 0.93214 0.91355 0.97889 1.21477 1.29784 1.11367 0.91665 0.93186 1.25716 0.95893 0.95930 1.01761 1.70022 1.38462 1.24417 1.23442 0.85712 0.78802 0.78331 0.79732 1.20735 1.20951 1.19373 0.92781 0.90994 0.93666 0.78255 0.89873 0.91949 0.90645 0.92249 0.93607 0.92765 0.93057 0.95877 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 8.56 71.98 0.62 -5.23 16 2 C 0.13 5.36 0.63 -10.79 -0.01 5.35 16 3 O -0.56 -22.37 11.23 -148.98 -1.67 -24.04 16 4 C -0.14 -4.42 4.92 30.59 0.15 -4.27 16 5 C -0.10 -3.39 5.78 30.59 0.18 -3.22 16 6 C -0.12 -4.63 5.92 30.60 0.18 -4.45 16 7 C -0.10 -5.12 4.84 30.59 0.15 -4.97 16 8 C 0.06 3.07 1.47 -11.54 -0.02 3.05 16 9 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 10 C -0.50 -28.76 7.50 25.60 0.19 -28.57 16 11 H 0.05 2.87 6.67 -2.91 -0.02 2.85 16 12 C 0.00 0.23 5.30 84.66 0.45 0.68 16 13 N -0.92 -55.31 11.32 21.45 0.24 -55.07 16 14 Si 0.95 45.71 29.54 68.60 2.03 47.74 16 15 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 19 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 20 H 0.04 1.86 6.62 -2.39 -0.02 1.84 16 21 H 0.37 10.53 9.05 -74.05 -0.67 9.86 16 22 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 1.96 7.68 -2.39 -0.02 1.94 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 2.93 6.07 -2.38 -0.01 2.92 16 29 H 0.02 1.20 7.68 -2.39 -0.02 1.18 16 30 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -64.72 235.52 2.92 -61.80 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.44 Total: 11.21 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 1.89 Total: -41.64 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.24 Total: -55.07 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.67 Total: -24.04 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -64.72 2.92 -61.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138257.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.845 kcal (2) G-P(sol) polarization free energy of solvation -64.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds