Wall clock time and date at job start Mon Mar 30 2020 02:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.19905 * 59.34058 * 9 7 2 11 11 C 1.53059 * 109.20291 * 178.64312 * 9 7 2 12 12 N 1.47260 * 108.56272 * 206.08574 * 11 9 7 13 13 C 1.33633 * 120.10043 * 289.30724 * 12 11 9 14 14 O 1.21283 * 120.04817 * 180.28614 * 13 12 11 15 15 C 1.51487 * 119.89742 * 0.26348 * 13 12 11 16 16 C 1.53146 * 108.37526 * 70.00128 * 15 13 12 17 17 N 1.45563 * 109.20340 * 299.99844 * 9 7 2 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.62219 * 325.80451 * 11 9 7 20 20 H 1.08999 * 109.62425 * 86.35878 * 11 9 7 21 21 H 0.97001 * 119.94521 * 109.33993 * 12 11 9 22 22 H 1.08995 * 109.68501 * 310.27894 * 15 13 12 23 23 H 1.09001 * 109.71354 * 189.74016 * 15 13 12 24 24 H 1.09002 * 109.22697 * 155.53803 * 16 15 13 25 25 H 1.08993 * 109.23015 * 36.16567 * 16 15 13 26 26 H 1.00909 * 111.00036 * 43.28372 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6169 -2.5469 -0.8858 11 6 2.2507 -3.6577 -0.0354 12 7 1.5950 -4.8243 -0.6498 13 6 0.6333 -5.4771 0.0097 14 8 0.0975 -6.4410 -0.4951 15 6 0.2139 -5.0116 1.3889 16 6 -0.5258 -3.6784 1.2442 17 7 0.4169 -2.5704 1.1903 18 1 -0.4850 0.8401 0.0004 19 1 3.1206 -3.3729 -0.6274 20 1 2.5606 -3.9045 0.9800 21 1 1.8619 -5.1197 -1.5344 22 1 1.0960 -4.8759 2.0146 23 1 -0.4470 -5.7509 1.8413 24 1 -1.1912 -3.5427 2.0969 25 1 -1.1159 -3.6929 0.3280 26 1 -0.0486 -1.6911 1.3588 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251559.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:38 Heat of formation + Delta-G solvation = -42.643943 kcal Electronic energy + Delta-G solvation = -11522.193919 eV Core-core repulsion = 9407.273957 eV Total energy + Delta-G solvation = -2114.919962 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.36670 -36.26900 -33.53755 -32.73726 -30.18069 -27.21523 -24.88879 -22.95662 -19.96985 -19.07346 -17.10441 -16.48821 -15.60319 -15.00861 -14.20304 -14.00909 -13.77572 -13.06815 -12.41577 -12.25015 -11.59993 -11.31966 -11.12848 -10.91105 -10.77154 -10.31094 -10.12454 -9.39824 -9.21530 -8.75776 -8.34689 -6.96742 -6.23921 -4.30719 3.22146 3.22982 3.28591 3.30608 3.98540 4.29998 4.97322 5.18371 5.52039 5.80266 5.90613 6.03053 6.17342 6.28996 6.43420 6.60862 6.66529 7.29089 7.39797 7.71575 7.85416 7.95944 8.58977 8.81464 8.88656 9.02156 9.38493 10.84758 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.075182 B = 0.012028 C = 0.011101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.337901 B = 2327.360185 C = 2521.604171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.066 3.934 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.209 3.791 10 H 0.002 0.998 11 C 0.112 3.888 12 N -0.723 5.723 13 C 0.518 3.482 14 O -0.580 6.580 15 C -0.136 4.136 16 C 0.078 3.922 17 N -0.707 5.707 18 H 0.267 0.733 19 H 0.081 0.919 20 H 0.071 0.929 21 H 0.391 0.609 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.016 0.984 26 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -3.359 2.116 4.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.100 3.900 10 H 0.020 0.980 11 C -0.012 4.012 12 N -0.373 5.373 13 C 0.305 3.695 14 O -0.461 6.461 15 C -0.177 4.177 16 C -0.053 4.053 17 N -0.347 5.347 18 H 0.077 0.923 19 H 0.099 0.901 20 H 0.090 0.910 21 H 0.226 0.774 22 H 0.113 0.887 23 H 0.105 0.895 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.453 -3.982 2.358 5.238 hybrid contribution -0.107 1.220 -0.961 1.557 sum 2.345 -2.762 1.397 3.883 Atomic orbital electron populations 1.69688 1.06094 1.27527 1.50472 1.25050 0.94973 0.99635 0.93966 0.86479 0.79464 0.82272 0.78734 1.21263 1.19960 1.20216 1.21115 0.93219 0.89761 1.51141 0.91765 1.19081 0.90655 0.92071 0.88170 0.98030 1.22263 0.96395 0.84612 0.97911 1.46244 1.38463 1.32189 1.20404 1.20780 0.78513 0.81693 0.88525 1.90656 1.55827 1.28880 1.70727 1.22109 1.02625 0.99107 0.93868 1.21281 0.93758 0.90743 0.99483 1.58486 1.27266 1.07313 1.41636 0.92289 0.90088 0.91037 0.77449 0.88745 0.89501 0.91637 0.96635 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.06 11.54 55.43 0.64 -23.42 15 2 C 0.07 1.70 5.22 -17.82 -0.09 1.61 15 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 15 4 H -0.29 -6.38 7.11 56.52 0.40 -5.97 15 5 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.51 -12.98 8.62 -34.44 -0.30 -13.27 15 8 H 0.06 1.56 7.62 -52.49 -0.40 1.16 15 9 C 0.21 4.91 2.28 -69.56 -0.16 4.75 15 10 H 0.00 0.06 8.05 -51.93 -0.42 -0.36 15 11 C 0.11 2.15 5.91 -3.60 -0.02 2.12 15 12 N -0.72 -13.42 5.31 -59.73 -0.32 -13.74 15 13 C 0.52 10.38 7.10 -11.11 -0.08 10.30 15 14 O -0.58 -13.22 17.93 5.55 0.10 -13.12 15 15 C -0.14 -2.43 5.62 -27.42 -0.15 -2.58 15 16 C 0.08 1.55 6.30 -4.46 -0.03 1.52 15 17 N -0.71 -16.00 6.06 -109.75 -0.67 -16.66 15 18 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 19 H 0.08 1.43 7.79 -51.93 -0.40 1.03 15 20 H 0.07 1.32 7.02 -51.93 -0.36 0.96 15 21 H 0.39 6.58 8.92 -40.82 -0.36 6.21 15 22 H 0.09 1.59 7.07 -51.93 -0.37 1.22 15 23 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.02 0.34 7.87 -51.93 -0.41 -0.07 15 26 H 0.37 9.26 6.42 -39.29 -0.25 9.00 15 LS Contribution 218.10 15.07 3.29 3.29 Total: -1.00 -28.35 218.10 -5.77 -34.12 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -2.96 Total: 10.13 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.83 Total: 4.45 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.34 Total: -53.82 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.10 Total: -13.12 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -28.35 -5.77 -34.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251559.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.524 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds