Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99777 * 2 1 4 4 H 1.48496 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47066 * 299.99959 * 3 2 1 6 6 H 1.48501 * 109.47103 * 60.00092 * 3 2 1 7 7 C 1.37872 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00439 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99885 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.19565 * 299.34347 * 9 7 2 11 11 C 1.53063 * 109.20110 * 179.97438 * 9 7 2 12 12 N 1.47252 * 108.55975 * 153.96204 * 11 9 7 13 13 C 1.33638 * 120.10280 * 70.68678 * 12 11 9 14 14 O 1.21283 * 120.04889 * 179.71568 * 13 12 11 15 15 C 1.51487 * 119.89733 * 359.97438 * 13 12 11 16 16 C 1.53663 * 108.10350 * 289.76510 * 15 13 12 17 17 N 1.45564 * 109.16144 * 58.66387 * 9 7 2 18 18 H 0.97006 * 120.00442 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.62238 * 34.24473 * 11 9 7 20 20 H 1.09001 * 109.77662 * 273.77670 * 11 9 7 21 21 H 0.97000 * 119.95362 * 250.71366 * 12 11 9 22 22 H 1.08993 * 109.68462 * 49.45851 * 15 13 12 23 23 H 1.08998 * 109.68245 * 170.02170 * 15 13 12 24 24 H 1.08996 * 109.33059 * 323.94309 * 16 15 13 25 25 H 1.09005 * 109.20213 * 204.52506 * 16 15 13 26 26 H 1.00905 * 110.99924 * 60.86708 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6353 -2.5567 0.8993 11 6 2.2512 -3.6578 0.0014 12 7 1.6085 -4.8319 0.6152 13 6 0.6330 -5.4767 -0.0317 14 8 0.1078 -6.4467 0.4725 15 6 0.1883 -4.9978 -1.3983 16 6 -0.5523 -3.6634 -1.2189 17 7 0.3924 -2.5562 -1.1723 18 1 -0.4851 0.8401 -0.0004 19 1 3.1333 -3.3800 0.5784 20 1 2.5425 -3.8933 -1.0222 21 1 1.8932 -5.1375 1.4907 22 1 1.0588 -4.8537 -2.0381 23 1 -0.4792 -5.7340 -1.8461 24 1 -1.1228 -3.6893 -0.2906 25 1 -1.2356 -3.5172 -2.0556 26 1 0.9364 -2.5078 -2.0208 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251560.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = -37.148401 kcal Electronic energy + Delta-G solvation = -11520.754971 eV Core-core repulsion = 9406.073314 eV Total energy + Delta-G solvation = -2114.681658 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.48954 -36.36916 -33.46642 -32.68539 -30.21733 -26.94330 -24.79300 -22.98388 -20.45209 -19.11985 -17.18991 -16.55326 -15.43779 -14.72923 -14.43035 -13.87644 -13.80491 -12.99233 -12.53722 -12.27192 -11.73579 -11.25952 -11.08605 -10.90167 -10.73899 -10.43060 -10.01020 -9.30388 -9.17420 -8.61339 -8.49595 -6.84287 -5.95398 -4.13179 3.15596 3.28035 3.37189 3.38698 3.91577 4.41358 5.09328 5.13028 5.50086 5.64373 5.77273 5.86295 6.06972 6.22177 6.31356 6.48563 6.67201 7.22687 7.35546 7.77100 7.82374 8.10439 8.57924 8.73810 8.83265 9.06614 9.57161 11.07893 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.075205 B = 0.012024 C = 0.011111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.224403 B = 2328.194716 C = 2519.350845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.085 3.915 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.216 3.784 10 H 0.043 0.957 11 C 0.074 3.926 12 N -0.723 5.723 13 C 0.519 3.481 14 O -0.577 6.577 15 C -0.181 4.181 16 C 0.082 3.918 17 N -0.666 5.666 18 H 0.256 0.744 19 H 0.082 0.918 20 H 0.058 0.942 21 H 0.392 0.608 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 -4.242 -2.590 5.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.108 3.892 10 H 0.060 0.940 11 C -0.051 4.051 12 N -0.373 5.373 13 C 0.306 3.694 14 O -0.458 6.458 15 C -0.224 4.224 16 C -0.049 4.049 17 N -0.295 5.295 18 H 0.066 0.934 19 H 0.100 0.900 20 H 0.076 0.924 21 H 0.227 0.773 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.972 -4.150 -2.232 5.108 hybrid contribution 1.228 0.177 0.069 1.243 sum 3.200 -3.973 -2.163 5.541 Atomic orbital electron populations 1.70114 1.05780 1.25773 1.45973 1.24957 0.94620 0.98728 0.93947 0.86683 0.80185 0.84290 0.77556 1.19863 1.21019 1.21140 1.20932 0.92280 0.89849 1.55014 0.92421 1.19252 0.88756 0.90880 0.90324 0.93954 1.23115 0.98572 0.86056 0.97344 1.46205 1.37509 1.31885 1.21655 1.20700 0.78636 0.81856 0.88200 1.90662 1.56670 1.28348 1.70135 1.23111 1.02447 1.02791 0.94051 1.21695 0.95825 0.85593 1.01828 1.58456 1.24500 1.41172 1.05386 0.93377 0.89971 0.92409 0.77327 0.90011 0.89509 0.91845 0.91395 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.36 12.69 55.43 0.70 -22.65 15 2 C 0.09 2.23 5.38 -17.82 -0.10 2.14 15 3 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.29 -6.54 7.11 56.52 0.40 -6.13 15 7 C -0.54 -13.61 8.61 -34.44 -0.30 -13.91 15 8 H 0.06 1.41 7.61 -52.49 -0.40 1.01 15 9 C 0.22 4.91 2.18 -69.55 -0.15 4.76 15 10 H 0.04 1.12 8.05 -51.93 -0.42 0.70 15 11 C 0.07 1.37 5.90 -3.60 -0.02 1.34 15 12 N -0.72 -12.97 5.31 -59.73 -0.32 -13.28 15 13 C 0.52 10.08 7.08 -11.11 -0.08 10.00 15 14 O -0.58 -12.94 17.93 5.55 0.10 -12.84 15 15 C -0.18 -3.04 5.65 -27.15 -0.15 -3.20 15 16 C 0.08 1.55 6.33 -4.17 -0.03 1.52 15 17 N -0.67 -14.39 5.19 -109.42 -0.57 -14.96 15 18 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 19 H 0.08 1.43 7.78 -51.93 -0.40 1.03 15 20 H 0.06 0.99 6.94 -51.93 -0.36 0.63 15 21 H 0.39 6.45 8.92 -40.82 -0.36 6.08 15 22 H 0.08 1.25 6.99 -51.93 -0.36 0.89 15 23 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.06 1.33 7.87 -51.93 -0.41 0.92 15 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.33 6.63 8.63 -39.29 -0.34 6.29 15 LS Contribution 220.50 15.07 3.32 3.32 Total: -1.00 -29.28 220.50 -5.64 -34.92 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.04 Total: 7.76 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.82 Total: 2.65 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.18 Total: -50.89 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.10 Total: -12.84 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.28 -5.64 -34.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251560.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.227 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds