Wall clock time and date at job start Mon Mar 30 2020 02:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46218 * 124.85454 * 269.72268 * 3 2 1 5 5 N 1.46800 * 108.05546 * 179.82740 * 4 3 2 6 6 C 1.36940 * 127.03007 * 180.15597 * 5 4 3 7 7 H 1.08004 * 120.00046 * 0.33164 * 6 5 4 8 8 C 1.38805 * 120.00247 * 180.33625 * 6 5 4 9 9 N 1.31626 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00433 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46607 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46856 * 119.99811 * 10 8 6 13 13 H 1.48494 * 109.47111 * 239.99668 * 10 8 6 14 14 C 1.46981 * 105.93984 * 0.41261 * 5 4 3 15 15 C 1.34303 * 124.85393 * 90.01869 * 3 2 1 16 16 O 1.21282 * 125.42564 * 359.97438 * 15 3 2 17 17 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 19 19 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 20 20 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 21 21 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 22 22 H 1.09004 * 109.75243 * 299.65478 * 4 3 2 23 23 H 1.09007 * 109.75423 * 60.33827 * 4 3 2 24 24 H 0.96994 * 120.00100 * 179.97438 * 9 8 6 25 25 H 1.08999 * 110.04151 * 240.46525 * 14 5 4 26 26 H 1.09000 * 110.08260 * 119.03620 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3024 2.1671 -1.1999 5 7 2.7650 3.4942 -0.7756 6 6 3.1331 4.5365 -1.5838 7 1 3.0937 4.4273 -2.6576 8 6 3.5571 5.7334 -1.0231 9 7 3.6048 5.8667 0.2855 10 14 4.0599 7.1551 -2.1256 11 1 3.9164 6.7532 -3.5479 12 1 3.1882 8.3259 -1.8521 13 1 5.4742 7.5166 -1.8530 14 6 2.7582 3.4732 0.6940 15 6 2.2746 2.1048 1.1021 16 8 2.1381 1.7189 2.2438 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 0.5139 0.8900 20 1 1.8934 -0.5138 0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 3.0770 1.6748 -1.7879 23 1 1.3959 2.2691 -1.7967 24 1 3.9014 6.7029 0.6773 25 1 2.0813 4.2377 1.0754 26 1 3.7652 3.6425 1.0754 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306169200.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:59 Heat of formation + Delta-G solvation = -0.149803 kcal Electronic energy + Delta-G solvation = -11370.891399 eV Core-core repulsion = 9257.814121 eV Total energy + Delta-G solvation = -2113.077278 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.55308 -35.97652 -34.35830 -31.86690 -29.45709 -27.38375 -25.34201 -22.96511 -21.40167 -18.97917 -17.32622 -15.70969 -15.32001 -14.90653 -14.67461 -13.59436 -13.27513 -13.00470 -12.69327 -12.67532 -11.96464 -11.49378 -11.38093 -11.10509 -10.87316 -10.85495 -10.23720 -9.97897 -8.99936 -8.94040 -8.25857 -7.05508 -5.90474 -3.28740 3.32290 3.33894 3.37233 3.41676 3.55983 4.34318 5.09510 5.26117 5.33967 5.42784 5.54830 5.64740 5.82812 6.02717 6.11427 6.25666 6.40490 6.89723 7.11704 7.12562 7.54824 7.67489 8.03707 8.82951 9.01281 9.58665 10.20850 11.23464 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.074309 B = 0.011474 C = 0.010314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.714762 B = 2439.819844 C = 2714.230963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.129 3.871 3 N -0.634 5.634 4 C 0.360 3.640 5 N -0.606 5.606 6 C -0.233 4.233 7 H 0.089 0.911 8 C -0.002 4.002 9 N -0.919 5.919 10 Si 0.923 3.077 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.288 1.288 14 C 0.144 3.856 15 C 0.503 3.497 16 O -0.553 6.553 17 H 0.062 0.938 18 H 0.057 0.943 19 H 0.058 0.942 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.258 0.742 25 H 0.085 0.915 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -7.657 -3.365 8.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 N -0.370 5.370 4 C 0.149 3.851 5 N -0.336 5.336 6 C -0.360 4.360 7 H 0.106 0.894 8 C -0.200 4.200 9 N -0.565 5.565 10 Si 0.752 3.248 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.215 1.215 14 C 0.016 3.984 15 C 0.293 3.707 16 O -0.431 6.431 17 H 0.081 0.919 18 H 0.076 0.924 19 H 0.077 0.923 20 H 0.095 0.905 21 H 0.092 0.908 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.276 -7.702 -2.761 8.814 hybrid contribution 0.233 0.738 -0.573 0.963 sum -3.043 -6.964 -3.334 8.299 Atomic orbital electron populations 1.22158 0.96230 1.01627 1.02611 1.21154 0.94028 0.81641 1.02493 1.48572 1.66087 1.13604 1.08705 1.20719 0.96476 0.83887 0.84024 1.44199 1.78633 1.09115 1.01655 1.18961 1.38681 0.89241 0.89087 0.89356 1.24896 1.00772 0.98114 0.96177 1.69901 1.51957 1.26029 1.08658 0.85893 0.77934 0.81746 0.79202 1.20239 1.21486 1.21479 1.21111 1.02321 0.89496 0.85448 1.22050 0.75325 0.89051 0.84263 1.90613 1.55240 1.76759 1.20482 0.91911 0.92380 0.92327 0.90483 0.90772 0.94897 0.94902 0.93143 0.89782 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 15 2 C 0.13 1.92 6.70 -4.04 -0.03 1.89 15 3 N -0.63 -12.36 2.93 -177.57 -0.52 -12.88 15 4 C 0.36 7.32 7.89 -63.73 -0.50 6.82 15 5 N -0.61 -15.26 3.43 -177.79 -0.61 -15.87 15 6 C -0.23 -6.18 10.35 -15.06 -0.16 -6.34 15 7 H 0.09 2.20 7.83 -52.48 -0.41 1.79 15 8 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 15 9 N -0.92 -26.36 10.54 55.49 0.58 -25.77 15 10 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 15 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 14 C 0.14 3.64 5.47 -4.90 -0.03 3.62 15 15 C 0.50 11.61 8.13 -11.16 -0.09 11.52 15 16 O -0.55 -13.73 17.67 5.56 0.10 -13.63 15 17 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 18 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 19 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.08 1.16 7.98 -51.93 -0.41 0.75 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.03 0.64 8.14 -51.92 -0.42 0.22 15 24 H 0.26 7.14 8.31 -40.82 -0.34 6.81 15 25 H 0.08 2.31 7.54 -51.93 -0.39 1.92 15 26 H 0.08 2.30 7.54 -51.93 -0.39 1.90 15 LS Contribution 227.78 15.07 3.43 3.43 Total: -1.00 -30.36 227.78 -5.84 -36.20 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -3.28 Total: -3.14 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: -0.52 Total: 15.51 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.55 Total: -54.52 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.10 Total: -13.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.36 -5.84 -36.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306169200.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.049 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds