Wall clock time and date at job start Mon Mar 30 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47279 * 2 1 4 4 C 1.52998 * 109.82752 * 305.56749 * 3 2 1 5 5 C 1.54383 * 109.83206 * 184.58318 * 3 2 1 6 6 C 1.55297 * 102.25790 * 219.13001 * 5 3 2 7 7 C 1.54953 * 100.94208 * 34.13334 * 6 5 3 8 8 H 1.09006 * 110.38807 * 82.51077 * 7 6 5 9 9 C 1.50695 * 110.30955 * 204.63933 * 7 6 5 10 10 H 1.07995 * 120.00496 * 357.16731 * 9 7 6 11 11 C 1.37880 * 119.99572 * 177.16664 * 9 7 6 12 12 N 1.31511 * 120.00327 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99951 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 59.99744 * 13 11 9 15 15 H 1.48503 * 109.47261 * 299.99924 * 13 11 9 16 16 H 1.48500 * 109.47454 * 179.97438 * 13 11 9 17 17 O 1.43241 * 109.83029 * 66.45425 * 3 2 1 18 18 H 1.08998 * 109.47563 * 179.97438 * 1 2 3 19 19 H 1.09004 * 109.47168 * 300.00200 * 1 2 3 20 20 H 1.08997 * 109.46878 * 59.99680 * 1 2 3 21 21 H 1.08994 * 109.47053 * 239.99840 * 2 1 3 22 22 H 1.09007 * 109.46842 * 120.00466 * 2 1 3 23 23 H 1.08998 * 109.47634 * 179.43369 * 4 3 2 24 24 H 1.09004 * 109.46835 * 299.43672 * 4 3 2 25 25 H 1.08997 * 109.46921 * 59.42761 * 4 3 2 26 26 H 1.09007 * 110.84927 * 337.32641 * 5 3 2 27 27 H 1.09003 * 110.84400 * 100.73799 * 5 3 2 28 28 H 1.08995 * 111.12867 * 276.22071 * 6 5 3 29 29 H 1.08997 * 111.12713 * 152.04684 * 6 5 3 30 30 H 0.97006 * 119.99995 * 359.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4238 2.2108 -1.1708 5 6 3.5795 1.4536 -0.1160 6 6 3.9742 2.6073 0.8457 7 6 2.8863 2.4635 1.9397 8 1 3.1675 1.6913 2.6558 9 6 2.6767 3.7786 2.6451 10 1 3.2854 4.6326 2.3873 11 6 1.7079 3.8914 3.6195 12 7 0.9669 2.8513 3.9338 13 14 1.4476 5.5217 4.4935 14 1 1.0803 6.5628 3.5002 15 1 2.7003 5.9179 5.1856 16 1 0.3548 5.3808 5.4891 17 8 1.6945 2.0800 1.2353 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 1.7830 3.2398 -1.1594 24 1 1.7115 1.7358 -2.1087 25 1 0.3377 2.2039 -1.0783 26 1 4.0008 0.5064 0.2207 27 1 3.8898 1.6729 -1.1377 28 1 3.9053 3.5746 0.3481 29 1 4.9703 2.4504 1.2595 30 1 1.1018 2.0047 3.4797 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306344183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:48 Heat of formation + Delta-G solvation = -91.531977 kcal Electronic energy + Delta-G solvation = -11944.049590 eV Core-core repulsion = 9930.550027 eV Total energy + Delta-G solvation = -2013.499563 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.56046 -35.80330 -34.01047 -32.80613 -30.30529 -28.08526 -25.83842 -23.89345 -22.28839 -20.40695 -19.08969 -17.28018 -16.39360 -15.66018 -15.44744 -15.02399 -14.84466 -14.35844 -13.80578 -13.51354 -12.98467 -12.76756 -12.66762 -12.55616 -12.39957 -12.16509 -11.92326 -11.76489 -11.39274 -11.26609 -10.73943 -10.62151 -9.88937 -8.63672 -6.41668 1.51430 1.60758 1.79814 2.57192 3.05313 3.46320 3.80247 3.87907 4.12431 4.22032 4.32595 4.43938 4.56736 4.69283 4.73093 4.79728 4.85398 4.97715 5.02718 5.05450 5.16574 5.24929 5.36312 5.52169 5.55257 5.98879 6.11241 6.56177 6.84032 7.52454 8.77192 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050519 B = 0.013637 C = 0.012145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.116288 B = 2052.790737 C = 2304.924217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.077 3.923 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.133 4.133 7 C 0.183 3.817 8 H -0.016 1.016 9 C -0.628 4.628 10 H 0.053 0.947 11 C -0.023 4.023 12 N -0.920 5.920 13 Si 1.117 2.883 14 H -0.272 1.272 15 H -0.265 1.265 16 H -0.283 1.283 17 O -0.397 6.397 18 H 0.067 0.933 19 H 0.023 0.977 20 H 0.066 0.934 21 H 0.095 0.905 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -3.073 -9.377 10.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.037 3.963 4 C -0.199 4.199 5 C -0.173 4.173 6 C -0.171 4.171 7 C 0.128 3.872 8 H 0.001 0.999 9 C -0.665 4.665 10 H 0.072 0.928 11 C -0.224 4.224 12 N -0.556 5.556 13 Si 0.938 3.062 14 H -0.198 1.198 15 H -0.190 1.190 16 H -0.209 1.209 17 O -0.318 6.318 18 H 0.086 0.914 19 H 0.043 0.957 20 H 0.085 0.915 21 H 0.113 0.887 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.707 -2.316 -8.167 8.659 hybrid contribution 1.029 -0.906 -0.896 1.637 sum 2.736 -3.222 -9.063 10.000 Atomic orbital electron populations 1.21699 0.95655 1.01492 1.01198 1.21817 0.96847 0.95092 1.01876 1.22366 0.94281 0.92993 0.86623 1.22036 1.00940 0.99682 0.97279 1.23144 0.94681 0.98591 1.00919 1.23059 0.98820 0.98615 0.96579 1.20535 0.83212 0.93183 0.90273 0.99874 1.22429 1.23319 0.97778 1.23018 0.92837 1.27411 0.92172 1.06578 0.96217 1.70791 1.39284 1.02661 1.42855 0.82967 0.77087 0.70585 0.75553 1.19769 1.19013 1.20877 1.88665 1.33064 1.77764 1.32334 0.91447 0.95734 0.91502 0.88683 0.93876 0.94054 0.89153 0.92853 0.90584 0.88243 0.91982 0.90835 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.32 71.98 0.67 -4.03 16 2 C -0.12 -3.95 5.11 30.59 0.16 -3.79 16 3 C 0.08 2.98 0.94 -10.33 -0.01 2.97 16 4 C -0.14 -4.78 8.24 71.98 0.59 -4.19 16 5 C -0.14 -4.64 6.09 31.85 0.19 -4.45 16 6 C -0.13 -5.61 6.53 32.05 0.21 -5.40 16 7 C 0.18 9.95 2.82 30.51 0.09 10.03 16 8 H -0.02 -0.96 8.04 -2.38 -0.02 -0.98 16 9 C -0.63 -37.40 8.81 25.60 0.23 -37.18 16 10 H 0.05 3.09 7.77 -2.91 -0.02 3.06 16 11 C -0.02 -1.37 5.42 84.66 0.46 -0.91 16 12 N -0.92 -59.57 13.55 21.45 0.29 -59.28 16 13 Si 1.12 51.99 29.90 68.60 2.05 54.04 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 17 O -0.40 -21.03 8.82 -148.98 -1.31 -22.34 16 18 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 19 H 0.02 0.98 7.88 -2.38 -0.02 0.96 16 20 H 0.07 1.96 6.36 -2.39 -0.02 1.94 16 21 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 22 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.05 1.84 6.34 -2.39 -0.02 1.82 16 26 H 0.08 2.39 7.85 -2.38 -0.02 2.38 16 27 H 0.10 2.72 7.83 -2.39 -0.02 2.70 16 28 H 0.06 2.64 8.05 -2.39 -0.02 2.62 16 29 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.26 17.54 6.57 -92.70 -0.61 16.93 16 Total: -1.00 -69.80 242.42 4.86 -64.94 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.25 Total: 9.57 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 2.58 Total: -46.94 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.29 Total: -59.28 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.31 Total: -22.34 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -69.80 4.86 -64.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306344183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.591 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds