Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47258 * 2 1 4 4 O 1.42894 * 109.46950 * 65.00042 * 3 2 1 5 5 C 1.50705 * 109.46982 * 185.00408 * 3 2 1 6 6 H 1.08000 * 119.99788 * 119.99993 * 5 3 2 7 7 C 1.37881 * 119.99581 * 299.99775 * 5 3 2 8 8 N 1.31518 * 119.99677 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00389 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47291 * 89.99753 * 9 7 5 11 11 H 1.48497 * 109.47179 * 209.99973 * 9 7 5 12 12 H 1.48506 * 109.47019 * 329.99853 * 9 7 5 13 13 C 1.53000 * 109.46748 * 304.99997 * 3 2 1 14 14 C 1.53787 * 113.60890 * 185.00040 * 13 3 2 15 15 C 1.53784 * 87.07923 * 139.98364 * 14 13 3 16 16 C 1.53779 * 87.08045 * 334.56667 * 15 14 13 17 17 H 1.09011 * 109.47090 * 300.00075 * 1 2 3 18 18 H 1.09006 * 109.47354 * 59.99447 * 1 2 3 19 19 H 1.08993 * 109.47785 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46798 * 239.99897 * 2 1 3 21 21 H 1.08997 * 109.47202 * 119.99990 * 2 1 3 22 22 H 0.96702 * 113.99983 * 179.97438 * 4 3 2 23 23 H 0.96999 * 119.99947 * 180.02562 * 8 7 5 24 24 H 1.09000 * 112.90915 * 53.75146 * 13 3 2 25 25 H 1.09004 * 113.61202 * 254.53117 * 14 13 3 26 26 H 1.08994 * 113.61447 * 25.43549 * 14 13 3 27 27 H 1.09002 * 113.61478 * 89.11632 * 15 14 13 28 28 H 1.09004 * 113.61162 * 220.01809 * 15 14 13 29 29 H 1.09006 * 113.61307 * 270.88660 * 16 15 14 30 30 H 1.08999 * 113.69146 * 139.99146 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6620 2.0814 1.2210 5 6 3.5419 1.4443 -0.1239 6 1 4.0140 1.9359 -0.9617 7 6 4.3132 0.8182 0.8322 8 7 5.6240 0.8202 0.7244 9 14 3.4966 -0.0326 2.2808 10 1 3.2215 -1.4496 1.9318 11 1 4.3987 0.0208 3.4591 12 1 2.2201 0.6545 2.6031 13 6 1.4299 2.1991 -1.1817 14 6 1.9734 3.6285 -1.3445 15 6 1.9693 3.3729 -2.8610 16 6 2.0959 1.8766 -2.5297 17 1 -0.3634 0.5139 0.8901 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0275 0.0005 20 1 1.8932 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 1.9532 3.0009 1.2904 23 1 6.1666 0.3794 1.3968 24 1 0.3418 2.1402 -1.2070 25 1 1.2715 4.4009 -1.0301 26 1 2.9709 3.7665 -0.9277 27 1 1.0287 3.6349 -3.3455 28 1 2.8395 3.7815 -3.3749 29 1 3.1271 1.5356 -2.4368 30 1 1.4936 1.2335 -3.1714 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306479101.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = -30.749525 kcal Electronic energy + Delta-G solvation = -12172.349966 eV Core-core repulsion = 10161.486128 eV Total energy + Delta-G solvation = -2010.863838 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.91546 -35.35978 -32.31427 -31.84517 -27.42065 -24.85139 -24.61724 -22.53340 -19.89855 -18.53757 -17.10747 -15.13952 -14.84059 -14.64057 -13.56265 -13.39312 -12.89599 -12.42092 -12.07434 -11.72272 -11.57730 -11.31375 -11.02387 -10.79774 -10.53379 -10.08590 -9.95069 -9.61064 -9.47827 -9.39521 -8.55119 -8.47738 -7.97872 -6.07131 -4.15458 3.40753 3.53169 3.77343 4.56598 5.21206 5.40617 5.45487 5.51851 5.65331 5.77447 5.98310 6.09252 6.20481 6.25657 6.36642 6.51060 6.55472 6.57477 6.68826 6.83701 6.92642 7.03281 7.10132 7.34866 7.51051 7.76715 8.37821 8.90270 9.12401 9.59659 11.03035 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.040393 B = 0.019906 C = 0.016007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.024436 B = 1406.283002 C = 1748.802762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.228 3.772 4 O -0.578 6.578 5 C -0.547 4.547 6 H 0.082 0.918 7 C 0.081 3.919 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.292 1.292 11 H -0.308 1.308 12 H -0.218 1.218 13 C -0.122 4.122 14 C -0.132 4.132 15 C -0.146 4.146 16 C -0.129 4.129 17 H 0.054 0.946 18 H 0.050 0.950 19 H 0.036 0.964 20 H 0.066 0.934 21 H 0.050 0.950 22 H 0.357 0.643 23 H 0.263 0.737 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 2.054 -3.049 8.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C 0.189 3.811 4 O -0.384 6.384 5 C -0.584 4.584 6 H 0.099 0.901 7 C -0.122 4.122 8 N -0.533 5.533 9 Si 0.706 3.294 10 H -0.220 1.220 11 H -0.237 1.237 12 H -0.141 1.141 13 C -0.140 4.140 14 C -0.170 4.170 15 C -0.184 4.184 16 C -0.166 4.166 17 H 0.073 0.927 18 H 0.069 0.931 19 H 0.055 0.945 20 H 0.085 0.915 21 H 0.069 0.931 22 H 0.203 0.797 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.080 1.421 -2.872 8.692 hybrid contribution 0.073 -0.073 0.565 0.574 sum -8.007 1.348 -2.308 8.441 Atomic orbital electron populations 1.21856 0.97678 0.99706 1.01489 1.21700 0.93822 0.97831 1.01137 1.19004 0.93335 0.88280 0.80524 1.86559 1.81717 1.28668 1.41419 1.21534 0.89229 1.36814 1.10823 0.90057 1.25012 0.94494 0.94819 0.97883 1.69950 1.04560 1.43329 1.35510 0.87162 0.81565 0.79091 0.81593 1.21963 1.23715 1.14086 1.23034 0.98056 0.96134 0.96806 1.22896 1.02149 0.96433 0.95490 1.22802 1.00261 0.98277 0.97036 1.22992 1.02906 0.94668 0.96020 0.92730 0.93082 0.94498 0.91503 0.93127 0.79736 0.92765 0.91057 0.93338 0.88718 0.91747 0.92433 0.87896 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.38 37.15 0.35 -2.42 16 2 C -0.11 -2.37 4.61 -26.73 -0.12 -2.50 16 3 C 0.23 5.15 0.29 -91.76 -0.03 5.12 16 4 O -0.58 -13.08 9.36 -35.23 -0.33 -13.41 16 5 C -0.55 -14.51 7.08 -34.44 -0.24 -14.75 16 6 H 0.08 2.30 5.63 -52.49 -0.30 2.00 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.22 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 9 Si 0.88 22.40 23.86 -169.99 -4.06 18.34 16 10 H -0.29 -7.44 6.91 56.52 0.39 -7.05 16 11 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 12 H -0.22 -5.45 5.30 56.52 0.30 -5.15 16 13 C -0.12 -2.37 2.85 -89.81 -0.26 -2.62 16 14 C -0.13 -2.39 6.82 -25.91 -0.18 -2.57 16 15 C -0.15 -2.42 8.08 -25.92 -0.21 -2.63 16 16 C -0.13 -2.41 7.24 -25.92 -0.19 -2.59 16 17 H 0.05 1.03 7.82 -51.92 -0.41 0.62 16 18 H 0.05 0.87 6.24 -51.93 -0.32 0.54 16 19 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 20 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 21 H 0.05 1.20 3.41 -51.93 -0.18 1.03 16 22 H 0.36 7.27 8.51 45.56 0.39 7.66 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.07 1.32 6.25 -51.93 -0.32 1.00 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.91 6.79 -51.93 -0.35 1.56 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 2.21 5.87 -51.93 -0.30 1.90 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 225.97 15.07 3.41 3.41 Total: -1.00 -29.33 225.97 -4.76 -34.09 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.58 Total: 6.67 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -0.97 Total: -22.76 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.77 Total: -26.34 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.33 Total: -13.41 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.06 Total: 18.34 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.33 -4.76 -34.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306479101.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.342 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds