Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47258 * 2 1 4 4 O 1.42894 * 109.46950 * 65.00042 * 3 2 1 5 5 C 1.50705 * 109.46982 * 185.00408 * 3 2 1 6 6 H 1.08000 * 119.99788 * 119.99993 * 5 3 2 7 7 C 1.37881 * 119.99581 * 299.99775 * 5 3 2 8 8 N 1.31518 * 119.99677 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00389 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47291 * 89.99753 * 9 7 5 11 11 H 1.48497 * 109.47179 * 209.99973 * 9 7 5 12 12 H 1.48506 * 109.47019 * 329.99853 * 9 7 5 13 13 C 1.53000 * 109.46748 * 304.99997 * 3 2 1 14 14 C 1.53787 * 113.60890 * 185.00040 * 13 3 2 15 15 C 1.53784 * 87.07923 * 139.98364 * 14 13 3 16 16 C 1.53779 * 87.08045 * 334.56667 * 15 14 13 17 17 H 1.09011 * 109.47090 * 300.00075 * 1 2 3 18 18 H 1.09006 * 109.47354 * 59.99447 * 1 2 3 19 19 H 1.08993 * 109.47785 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46798 * 239.99897 * 2 1 3 21 21 H 1.08997 * 109.47202 * 119.99990 * 2 1 3 22 22 H 0.96702 * 113.99983 * 179.97438 * 4 3 2 23 23 H 0.96999 * 119.99947 * 180.02562 * 8 7 5 24 24 H 1.09000 * 112.90915 * 53.75146 * 13 3 2 25 25 H 1.09004 * 113.61202 * 254.53117 * 14 13 3 26 26 H 1.08994 * 113.61447 * 25.43549 * 14 13 3 27 27 H 1.09002 * 113.61478 * 89.11632 * 15 14 13 28 28 H 1.09004 * 113.61162 * 220.01809 * 15 14 13 29 29 H 1.09006 * 113.61307 * 270.88660 * 16 15 14 30 30 H 1.08999 * 113.69146 * 139.99146 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6620 2.0814 1.2210 5 6 3.5419 1.4443 -0.1239 6 1 4.0140 1.9359 -0.9617 7 6 4.3132 0.8182 0.8322 8 7 5.6240 0.8202 0.7244 9 14 3.4966 -0.0326 2.2808 10 1 3.2215 -1.4496 1.9318 11 1 4.3987 0.0208 3.4591 12 1 2.2201 0.6545 2.6031 13 6 1.4299 2.1991 -1.1817 14 6 1.9734 3.6285 -1.3445 15 6 1.9693 3.3729 -2.8610 16 6 2.0959 1.8766 -2.5297 17 1 -0.3634 0.5139 0.8901 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0275 0.0005 20 1 1.8932 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 1.9532 3.0009 1.2904 23 1 6.1666 0.3794 1.3968 24 1 0.3418 2.1402 -1.2070 25 1 1.2715 4.4009 -1.0301 26 1 2.9709 3.7665 -0.9277 27 1 1.0287 3.6349 -3.3455 28 1 2.8395 3.7815 -3.3749 29 1 3.1271 1.5356 -2.4368 30 1 1.4936 1.2335 -3.1714 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306479101.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = -51.353505 kcal Electronic energy + Delta-G solvation = -12173.243422 eV Core-core repulsion = 10161.486128 eV Total energy + Delta-G solvation = -2011.757294 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.52865 -37.02909 -34.37721 -33.61325 -29.24021 -26.45685 -26.19092 -24.25616 -21.51707 -20.34191 -18.89583 -17.00774 -16.72257 -16.20628 -15.30288 -15.18334 -14.54876 -14.20878 -13.73903 -13.49724 -13.27408 -13.04468 -12.52811 -12.43284 -12.29972 -11.94491 -11.65324 -11.29029 -11.13128 -10.92509 -10.66570 -10.33706 -9.78990 -8.27617 -6.35564 1.34904 1.44303 1.71277 2.44008 3.09798 3.79215 3.97389 4.04026 4.14803 4.23296 4.47334 4.52484 4.72425 4.75147 4.94659 5.03064 5.11925 5.15649 5.18921 5.28423 5.33960 5.38525 5.58162 5.67753 5.80283 5.91895 6.26469 6.76518 7.28757 7.46682 8.86104 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.040393 B = 0.019906 C = 0.016007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.024436 B = 1406.283002 C = 1748.802762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.225 3.775 4 O -0.582 6.582 5 C -0.530 4.530 6 H 0.054 0.946 7 C 0.027 3.973 8 N -0.945 5.945 9 Si 0.931 3.069 10 H -0.292 1.292 11 H -0.320 1.320 12 H -0.205 1.205 13 C -0.121 4.121 14 C -0.133 4.133 15 C -0.131 4.131 16 C -0.134 4.134 17 H 0.051 0.949 18 H 0.069 0.931 19 H 0.057 0.943 20 H 0.062 0.938 21 H 0.031 0.969 22 H 0.366 0.634 23 H 0.261 0.739 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 2.432 -3.547 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.186 3.814 4 O -0.389 6.389 5 C -0.567 4.567 6 H 0.072 0.928 7 C -0.171 4.171 8 N -0.586 5.586 9 Si 0.760 3.240 10 H -0.220 1.220 11 H -0.249 1.249 12 H -0.127 1.127 13 C -0.139 4.139 14 C -0.170 4.170 15 C -0.168 4.168 16 C -0.171 4.171 17 H 0.070 0.930 18 H 0.088 0.912 19 H 0.076 0.924 20 H 0.081 0.919 21 H 0.049 0.951 22 H 0.213 0.787 23 H 0.069 0.931 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.767 1.810 -3.377 11.428 hybrid contribution 0.915 -0.149 0.648 1.131 sum -9.852 1.661 -2.729 10.357 Atomic orbital electron populations 1.21769 0.94372 1.01446 1.02214 1.21716 0.96833 0.96759 0.99987 1.19001 0.90800 0.89603 0.81979 1.86500 1.81416 1.29540 1.41430 1.21888 0.91804 1.34188 1.08857 0.92806 1.25716 0.94779 0.96150 1.00489 1.70076 1.06001 1.45718 1.36777 0.86316 0.80786 0.78236 0.78629 1.21997 1.24935 1.12728 1.23030 0.99093 0.96426 0.95350 1.22805 1.00930 0.96445 0.96825 1.22772 1.01955 0.96039 0.96047 1.22890 1.00947 0.96826 0.96442 0.93035 0.91219 0.92391 0.91939 0.95086 0.78665 0.93053 0.88729 0.90866 0.91864 0.88580 0.92311 0.91692 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.38 71.98 0.68 -3.99 16 2 C -0.12 -4.86 4.61 30.59 0.14 -4.72 16 3 C 0.23 9.85 0.29 -11.54 0.00 9.85 16 4 O -0.58 -25.10 9.36 -148.98 -1.39 -26.49 16 5 C -0.53 -28.45 7.08 25.60 0.18 -28.27 16 6 H 0.05 3.15 5.63 -2.91 -0.02 3.14 16 7 C 0.03 1.55 5.45 84.66 0.46 2.01 16 8 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 9 Si 0.93 46.85 23.86 68.60 1.64 48.49 16 10 H -0.29 -14.54 6.91 99.48 0.69 -13.85 16 11 H -0.32 -16.51 7.11 99.48 0.71 -15.80 16 12 H -0.21 -9.78 5.30 99.48 0.53 -9.26 16 13 C -0.12 -4.36 2.85 -10.27 -0.03 -4.39 16 14 C -0.13 -4.49 6.82 31.12 0.21 -4.28 16 15 C -0.13 -3.93 8.08 31.12 0.25 -3.68 16 16 C -0.13 -4.74 7.24 31.12 0.23 -4.52 16 17 H 0.05 1.74 7.82 -2.38 -0.02 1.72 16 18 H 0.07 2.04 6.24 -2.38 -0.01 2.02 16 19 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 20 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 21 H 0.03 1.42 3.41 -2.39 -0.01 1.41 16 22 H 0.37 14.26 8.51 -74.06 -0.63 13.63 16 23 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 24 H 0.09 3.05 6.25 -2.39 -0.01 3.03 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.06 2.54 6.79 -2.39 -0.02 2.52 16 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 2.81 5.87 -2.38 -0.01 2.80 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -63.08 225.97 2.96 -60.12 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.30 Total: 18.65 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 2.12 Total: -41.99 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.30 Total: -58.79 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -1.39 Total: -26.49 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.64 Total: 48.49 kcal Total: -63.08 2.96 -60.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306479101.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.765 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds