Wall clock time and date at job start Mon Mar 30 2020 02:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47009 * 2 1 4 4 O 1.42904 * 109.46854 * 60.05857 * 3 2 1 5 5 C 1.50691 * 109.47301 * 300.05646 * 3 2 1 6 6 H 1.08006 * 120.00170 * 120.34500 * 5 3 2 7 7 C 1.37879 * 120.00291 * 300.06510 * 5 3 2 8 8 N 1.31519 * 119.99735 * 354.39437 * 7 5 3 9 9 Si 1.86795 * 120.00319 * 174.38697 * 7 5 3 10 10 H 1.48508 * 109.46921 * 90.00234 * 9 7 5 11 11 H 1.48498 * 109.47154 * 210.00439 * 9 7 5 12 12 H 1.48504 * 109.47246 * 330.00614 * 9 7 5 13 13 C 1.53003 * 109.47037 * 180.02562 * 3 2 1 14 14 C 1.53782 * 113.61347 * 277.49804 * 13 3 2 15 15 C 1.53781 * 87.08204 * 220.01825 * 14 13 3 16 16 C 1.53780 * 87.08126 * 25.43700 * 15 14 13 17 17 H 1.09003 * 109.47540 * 56.11449 * 1 2 3 18 18 H 1.08998 * 109.47173 * 176.11610 * 1 2 3 19 19 H 1.09002 * 109.47064 * 296.11562 * 1 2 3 20 20 H 1.09008 * 109.46962 * 240.00861 * 2 1 3 21 21 H 1.08996 * 109.47544 * 120.00246 * 2 1 3 22 22 H 0.96700 * 114.00127 * 180.02562 * 4 3 2 23 23 H 0.96995 * 119.99870 * 179.97438 * 8 7 5 24 24 H 1.08995 * 112.84963 * 48.80853 * 13 3 2 25 25 H 1.08999 * 113.61524 * 334.56923 * 14 13 3 26 26 H 1.09004 * 113.61301 * 105.47258 * 14 13 3 27 27 H 1.08993 * 113.61698 * 270.88739 * 15 14 13 28 28 H 1.09008 * 113.61094 * 139.98165 * 15 14 13 29 29 H 1.08997 * 113.61442 * 220.01927 * 16 15 14 30 30 H 1.09003 * 113.69447 * 89.11820 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.5646 2.1157 1.1675 5 6 1.5365 2.1533 -1.2297 6 1 0.9202 3.0347 -1.1297 7 6 1.8673 1.6820 -2.4825 8 7 2.7103 0.6802 -2.6066 9 14 1.1180 2.4661 -4.0033 10 1 1.9862 3.5789 -4.4652 11 1 1.0028 1.4488 -5.0790 12 1 -0.2306 2.9940 -3.6748 13 6 3.5699 1.4425 -0.0006 14 6 4.1865 1.2585 1.3961 15 6 5.2327 2.3085 0.9864 16 6 4.1860 2.8517 -0.0006 17 1 -0.3634 0.5730 -0.8531 18 1 -0.3633 -1.0253 -0.0696 19 1 -0.3633 0.4524 0.9228 20 1 1.8933 -0.5137 -0.8901 21 1 1.8933 -0.5138 0.8899 22 1 1.8497 3.0374 1.2335 23 1 2.9427 0.3483 -3.4879 24 1 3.9929 0.7812 -0.7568 25 1 3.5353 1.5842 2.2072 26 1 4.6056 0.2658 1.5610 27 1 6.1112 1.8834 0.5011 28 1 5.4850 3.0076 1.7838 29 1 4.6045 3.1452 -0.9632 30 1 3.5339 3.6131 0.4275 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306479102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:41 Heat of formation + Delta-G solvation = -45.389585 kcal Electronic energy + Delta-G solvation = -12147.315791 eV Core-core repulsion = 10135.817112 eV Total energy + Delta-G solvation = -2011.498679 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.54388 -34.95661 -32.81054 -30.87469 -26.93671 -25.02993 -24.18763 -22.18762 -19.50184 -18.11117 -16.74395 -15.55831 -14.78179 -14.15197 -13.54183 -13.04632 -12.41564 -12.19863 -11.64939 -11.37477 -11.08480 -10.96593 -10.89970 -10.56555 -10.40179 -10.14403 -9.80291 -9.51269 -9.49256 -9.29234 -8.76773 -8.35101 -7.94683 -6.02276 -4.08491 3.27214 3.35037 3.39136 4.40077 5.24349 5.62599 5.70689 5.75623 5.91177 6.18960 6.34670 6.48692 6.59611 6.68605 6.73908 6.74337 6.88904 7.01445 7.14945 7.21014 7.42818 7.50152 7.63932 7.78112 7.83681 8.15683 8.34095 8.72504 9.24315 9.60273 11.00348 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.037793 B = 0.018775 C = 0.015087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.704416 B = 1491.007187 C = 1855.421568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 C 0.257 3.743 4 O -0.582 6.582 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 C -0.103 4.103 14 C -0.148 4.148 15 C -0.148 4.148 16 C -0.119 4.119 17 H 0.059 0.941 18 H 0.020 0.980 19 H 0.038 0.962 20 H 0.091 0.909 21 H 0.021 0.979 22 H 0.353 0.647 23 H 0.260 0.740 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 1.259 3.368 3.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 C 0.218 3.782 4 O -0.387 6.387 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.131 4.131 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.122 4.122 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.156 4.156 17 H 0.078 0.922 18 H 0.040 0.960 19 H 0.057 0.943 20 H 0.109 0.891 21 H 0.040 0.960 22 H 0.198 0.802 23 H 0.070 0.930 24 H 0.129 0.871 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.561 0.541 3.318 3.706 hybrid contribution -0.013 0.950 -1.135 1.480 sum 1.548 1.491 2.183 3.063 Atomic orbital electron populations 1.21538 0.97631 0.98056 1.01354 1.21341 0.94706 0.97069 1.00265 1.18733 0.88236 0.89524 0.81678 1.86343 1.78007 1.27182 1.47167 1.21614 1.31446 1.12441 0.90987 0.92494 1.24810 0.94620 0.95026 0.98670 1.69847 1.33003 1.26263 1.23280 0.86673 0.79835 0.79036 0.82944 1.20815 1.21203 1.19956 1.23145 0.98538 0.96100 0.94454 1.23042 0.97862 0.97306 1.00300 1.22838 0.97271 0.99156 0.99250 1.22622 0.96815 0.98504 0.97658 0.92164 0.96042 0.94300 0.89089 0.96010 0.80236 0.92964 0.87096 0.90422 0.93596 0.91530 0.93279 0.92841 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.54 37.15 0.35 -2.56 16 2 C -0.10 -2.33 4.98 -26.73 -0.13 -2.46 16 3 C 0.26 6.24 0.40 -91.77 -0.04 6.20 16 4 O -0.58 -13.37 10.93 -35.23 -0.39 -13.75 16 5 C -0.53 -13.79 6.45 -34.44 -0.22 -14.01 16 6 H 0.06 1.53 7.82 -52.48 -0.41 1.11 16 7 C 0.07 1.85 5.13 -17.82 -0.09 1.76 16 8 N -0.89 -23.66 9.64 55.43 0.53 -23.12 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 C -0.10 -2.36 2.50 -89.80 -0.22 -2.58 16 14 C -0.15 -2.92 7.48 -25.92 -0.19 -3.12 16 15 C -0.15 -2.67 8.08 -25.92 -0.21 -2.88 16 16 C -0.12 -2.45 6.98 -25.92 -0.18 -2.63 16 17 H 0.06 1.45 7.08 -51.93 -0.37 1.08 16 18 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 19 H 0.04 0.85 7.80 -51.93 -0.41 0.45 16 20 H 0.09 2.37 6.29 -51.92 -0.33 2.04 16 21 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.35 7.19 7.46 45.56 0.34 7.53 16 23 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.11 2.83 6.55 -51.93 -0.34 2.49 16 25 H 0.08 1.54 6.98 -51.93 -0.36 1.17 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.27 6.69 -51.93 -0.35 0.92 16 LS Contribution 236.81 15.07 3.57 3.57 Total: -1.00 -26.69 236.81 -6.13 -32.82 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.89 Total: 7.00 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -0.94 Total: -22.28 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.53 Total: -23.12 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.39 Total: -13.75 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -26.69 -6.13 -32.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306479102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.569 kcal (2) G-P(sol) polarization free energy of solvation -26.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds