Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00224 * 2 1 4 4 H 1.48501 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46942 * 299.99849 * 3 2 1 6 6 H 1.48495 * 109.47114 * 59.99759 * 3 2 1 7 7 C 1.37878 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99711 * 359.97438 * 7 2 1 10 10 H 1.09000 * 112.84867 * 308.31410 * 9 7 2 11 11 C 1.53781 * 113.61083 * 79.50970 * 9 7 2 12 12 C 1.53776 * 87.08233 * 139.98003 * 11 9 7 13 13 C 1.53781 * 113.61233 * 177.00341 * 9 7 2 14 14 H 1.08996 * 113.61587 * 334.56596 * 13 9 7 15 15 C 1.50693 * 113.61145 * 105.47689 * 13 9 7 16 16 O 1.21281 * 120.00633 * 359.97438 * 15 13 9 17 17 N 1.34783 * 119.99825 * 179.97438 * 15 13 9 18 18 N 1.36604 * 119.99872 * 179.97438 * 17 15 13 19 19 H 0.97007 * 120.00122 * 0.02562 * 1 2 3 20 20 H 1.09011 * 113.61471 * 254.53021 * 11 9 7 21 21 H 1.09003 * 113.61561 * 25.34291 * 11 9 7 22 22 H 1.09005 * 113.61566 * 89.11304 * 12 11 9 23 23 H 1.08994 * 113.61788 * 219.93121 * 12 11 9 24 24 H 0.96996 * 119.99863 * 0.02562 * 17 15 13 25 25 H 1.00901 * 110.99626 * 56.04899 * 18 17 15 26 26 H 1.00903 * 110.99711 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5003 -2.5545 0.7879 11 6 0.7202 -2.9040 -1.3859 12 6 1.1238 -4.3452 -1.0325 13 6 2.1615 -3.7362 -0.0748 14 1 3.1261 -3.5408 -0.5433 15 6 2.2832 -4.4755 1.2327 16 8 1.6909 -4.0760 2.2127 17 7 3.0503 -5.5808 1.3130 18 7 3.1611 -6.2506 2.4983 19 1 -0.4851 0.8401 -0.0004 20 1 -0.3553 -2.7668 -1.4987 21 1 1.2900 -2.4799 -2.2128 22 1 0.3387 -4.9067 -0.5259 23 1 1.5647 -4.8920 -1.8659 24 1 3.5243 -5.9001 0.5293 25 1 2.2536 -6.5200 2.8476 26 1 3.7657 -7.0530 2.4050 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306518572.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = -25.945998 kcal Electronic energy + Delta-G solvation = -11217.627327 eV Core-core repulsion = 9103.431442 eV Total energy + Delta-G solvation = -2114.195885 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.10329 -38.57695 -36.53250 -34.36590 -30.63552 -28.57284 -26.67330 -24.42583 -22.09479 -20.31982 -19.02693 -18.52437 -17.74628 -16.61120 -16.27829 -15.75308 -15.26885 -14.86030 -13.74242 -13.54720 -13.44053 -13.03873 -12.64542 -12.22351 -12.14935 -11.87408 -11.75834 -10.94956 -10.74992 -10.50313 -10.36837 -9.06731 -8.10650 -6.19949 1.40737 1.42905 1.54372 1.75809 2.05350 2.45617 3.20507 3.82345 3.94437 4.07959 4.30758 4.44817 4.74511 4.92633 5.02074 5.23558 5.46870 5.60505 5.76562 5.83408 6.02593 6.36112 6.38094 6.78493 6.89146 7.46790 7.67369 9.00127 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.053897 B = 0.011676 C = 0.010591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.385817 B = 2397.495398 C = 2643.161674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.013 0.987 11 C -0.127 4.127 12 C -0.101 4.101 13 C -0.123 4.123 14 H 0.122 0.878 15 C 0.522 3.478 16 O -0.581 6.581 17 N -0.567 5.567 18 N -0.619 5.619 19 H 0.260 0.740 20 H 0.033 0.967 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.105 0.895 24 H 0.419 0.581 25 H 0.344 0.656 26 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -12.179 -3.140 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.031 0.969 11 C -0.165 4.165 12 C -0.138 4.138 13 C -0.146 4.146 14 H 0.140 0.860 15 C 0.309 3.691 16 O -0.459 6.459 17 N -0.313 5.313 18 N -0.248 5.248 19 H 0.069 0.931 20 H 0.052 0.948 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.124 0.876 24 H 0.259 0.741 25 H 0.159 0.841 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.283 -11.136 -2.186 12.972 hybrid contribution -0.165 0.035 -0.402 0.436 sum 6.118 -11.101 -2.588 12.937 Atomic orbital electron populations 1.70114 1.07567 1.27181 1.51770 1.25831 0.95646 1.02735 0.94830 0.85535 0.79241 0.79533 0.77529 1.18671 1.20040 1.21261 1.21521 0.92977 0.91987 1.49956 0.92471 1.19808 0.93339 0.91044 0.93676 0.96923 1.22793 0.98831 0.95568 0.99353 1.22702 0.96816 0.96262 0.98068 1.22949 1.01379 0.98143 0.92094 0.85992 1.21079 0.77690 0.79603 0.90724 1.90646 1.48334 1.67029 1.39875 1.44676 1.50950 1.26382 1.09311 1.59816 1.18785 1.31753 1.14457 0.93141 0.94777 0.90938 0.91228 0.87623 0.74059 0.84097 0.80889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 15 2 C 0.01 0.45 5.46 84.66 0.46 0.91 15 3 Si 0.96 45.43 29.54 68.60 2.03 47.46 15 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.27 -12.51 7.11 99.48 0.71 -11.81 15 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 7 C -0.53 -30.31 8.76 25.60 0.22 -30.09 15 8 H 0.06 3.18 7.81 -2.91 -0.02 3.15 15 9 C 0.04 2.13 2.74 -11.01 -0.03 2.10 15 10 H 0.01 0.79 7.44 -2.39 -0.02 0.77 15 11 C -0.13 -5.66 7.63 31.12 0.24 -5.42 15 12 C -0.10 -3.38 7.63 31.12 0.24 -3.14 15 13 C -0.12 -4.84 3.70 -11.01 -0.04 -4.88 15 14 H 0.12 4.26 8.09 -2.39 -0.02 4.25 15 15 C 0.52 20.76 7.42 87.65 0.65 21.41 15 16 O -0.58 -29.96 16.12 -3.03 -0.05 -30.01 15 17 N -0.57 -15.41 6.47 -173.53 -1.12 -16.53 15 18 N -0.62 -15.01 10.03 37.02 0.37 -14.64 15 19 H 0.26 15.17 8.31 -92.70 -0.77 14.40 15 20 H 0.03 1.60 8.14 -2.38 -0.02 1.58 15 21 H 0.07 3.13 8.09 -2.39 -0.02 3.11 15 22 H 0.07 2.33 8.09 -2.38 -0.02 2.31 15 23 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.42 7.69 8.83 -215.50 -1.90 5.78 15 25 H 0.34 8.50 9.00 -210.55 -1.90 6.60 15 26 H 0.37 5.35 9.21 -210.55 -1.94 3.41 15 Total: -1.00 -76.58 231.26 -1.27 -77.86 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.52 Total: 12.00 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 1.74 Total: -19.11 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -0.47 Total: -88.20 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.01 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.58 -1.27 -77.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306518572.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.910 kcal (2) G-P(sol) polarization free energy of solvation -76.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds