Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 110.01690 * 2 1 4 4 H 1.09000 * 109.47122 * 178.61046 * 3 2 1 5 5 O 1.42898 * 109.47263 * 298.61129 * 3 2 1 6 6 C 1.50707 * 109.47143 * 58.61019 * 3 2 1 7 7 H 1.07997 * 119.99648 * 359.97438 * 6 3 2 8 8 C 1.37872 * 120.00014 * 179.97438 * 6 3 2 9 9 N 1.31516 * 120.00296 * 359.97438 * 8 6 3 10 10 Si 1.86796 * 120.00022 * 180.02562 * 8 6 3 11 11 H 1.48501 * 109.47221 * 59.99823 * 10 8 6 12 12 H 1.48506 * 109.47542 * 179.97438 * 10 8 6 13 13 H 1.48509 * 109.47063 * 299.99837 * 10 8 6 14 14 C 1.54268 * 110.07195 * 121.42111 * 2 1 3 15 15 C 1.54882 * 104.19625 * 95.69419 * 14 2 1 16 16 C 1.54897 * 102.74839 * 37.94120 * 15 14 2 17 17 C 1.53876 * 110.02721 * 238.61160 * 2 1 3 18 18 H 1.08999 * 109.46898 * 181.39494 * 1 2 3 19 19 H 1.09003 * 109.46698 * 301.38966 * 1 2 3 20 20 H 1.08995 * 109.47301 * 61.38516 * 1 2 3 21 21 H 0.96706 * 113.99915 * 60.00502 * 5 3 2 22 22 H 0.96997 * 120.00106 * 180.02562 * 9 8 6 23 23 H 1.08997 * 110.48664 * 337.01167 * 14 2 1 24 24 H 1.09002 * 110.48180 * 214.37442 * 14 2 1 25 25 H 1.08994 * 110.76048 * 279.62794 * 15 14 2 26 26 H 1.09004 * 110.75771 * 156.25188 * 15 14 2 27 27 H 1.08996 * 110.48686 * 80.73681 * 16 15 14 28 28 H 1.09000 * 110.48484 * 203.37978 * 16 15 14 29 29 H 1.09002 * 110.02982 * 121.38752 * 17 2 1 30 30 H 1.08997 * 110.03133 * 359.94785 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 1 3.1434 1.4273 0.0249 5 8 1.6107 2.1060 -1.1827 6 6 1.5304 2.1629 1.2129 7 1 0.8881 1.6499 1.9134 8 6 1.8715 3.4813 1.4283 9 7 2.6540 4.1058 0.5755 10 14 1.2233 4.3801 2.9320 11 1 1.6838 3.6850 4.1609 12 1 1.7325 5.7751 2.9327 13 1 -0.2613 4.3946 2.8983 14 6 2.0595 -0.7554 1.2365 15 6 2.3298 -2.1897 0.7184 16 6 2.8885 -1.9396 -0.7045 17 6 2.0570 -0.7530 -1.2341 18 1 -0.3633 -1.0274 0.0250 19 1 -0.3633 0.5353 0.8773 20 1 -0.3633 0.4921 -0.9021 21 1 0.6488 2.1527 -1.2711 22 1 2.8943 5.0332 0.7272 23 1 1.3076 -0.7701 2.0254 24 1 2.9820 -0.2994 1.5959 25 1 1.4053 -2.7653 0.6747 26 1 3.0700 -2.6923 1.3411 27 1 3.9448 -1.6749 -0.6585 28 1 2.7414 -2.8186 -1.3320 29 1 2.6860 -0.0942 -1.8330 30 1 1.2228 -1.1191 -1.8325 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306523855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = -97.186062 kcal Electronic energy + Delta-G solvation = -11935.900579 eV Core-core repulsion = 9922.155836 eV Total energy + Delta-G solvation = -2013.744743 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.10420 -36.62155 -34.20973 -31.96607 -29.51847 -28.40727 -26.37215 -23.78141 -21.41558 -19.46868 -18.81868 -16.96798 -16.64659 -16.03728 -15.52252 -15.00379 -14.45010 -14.26079 -13.71027 -13.24316 -12.85828 -12.71361 -12.54534 -12.32411 -12.06066 -11.82056 -11.77592 -11.54096 -11.27529 -11.21306 -10.74592 -10.56680 -9.88430 -8.07426 -6.29999 1.40221 1.41524 1.49212 2.41496 3.17900 3.84012 3.94361 4.01750 4.39168 4.60267 4.66230 4.68435 4.72292 4.85329 4.92629 5.07016 5.13918 5.23000 5.25159 5.34794 5.48943 5.55975 5.59373 5.66512 5.77345 5.93450 6.21535 6.81472 7.39791 7.60977 8.97050 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.054488 B = 0.013445 C = 0.012461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.748101 B = 2082.134217 C = 2246.432778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C 0.240 3.760 4 H 0.007 0.993 5 O -0.583 6.583 6 C -0.563 4.563 7 H 0.064 0.936 8 C 0.019 3.981 9 N -0.907 5.907 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.289 1.289 13 H -0.267 1.267 14 C -0.102 4.102 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.112 4.112 18 H 0.063 0.937 19 H 0.046 0.954 20 H 0.047 0.953 21 H 0.353 0.647 22 H 0.258 0.742 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 -10.420 0.259 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C 0.183 3.817 4 H 0.025 0.975 5 O -0.388 6.388 6 C -0.601 4.601 7 H 0.082 0.918 8 C -0.182 4.182 9 N -0.546 5.546 10 Si 0.778 3.222 11 H -0.194 1.194 12 H -0.215 1.215 13 H -0.192 1.192 14 C -0.139 4.139 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.149 4.149 18 H 0.082 0.918 19 H 0.065 0.935 20 H 0.066 0.934 21 H 0.198 0.802 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.628 -10.205 0.117 10.538 hybrid contribution -0.521 1.048 0.794 1.414 sum -3.149 -9.156 0.911 9.725 Atomic orbital electron populations 1.21724 0.94096 1.00918 1.01164 1.21775 0.96361 0.95897 0.94930 1.19323 0.92294 0.87217 0.82830 0.97537 1.86486 1.25043 1.81699 1.45561 1.22042 1.31432 0.97026 1.09592 0.91833 1.25923 0.94731 0.98925 0.98636 1.70226 1.35987 1.11172 1.37186 0.85721 0.79046 0.77333 0.80121 1.19439 1.21470 1.19182 1.22220 0.99761 0.95233 0.96717 1.22492 1.01184 0.95718 0.95885 1.22351 0.98744 0.97745 0.96930 1.22178 0.99318 0.96445 0.96978 0.91759 0.93456 0.93391 0.80225 0.93362 0.92230 0.94130 0.90344 0.90877 0.92901 0.89961 0.94312 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 7.58 71.98 0.55 -3.76 16 2 C -0.09 -3.54 0.47 -51.45 -0.02 -3.56 16 3 C 0.24 12.43 1.82 29.85 0.05 12.48 16 4 H 0.01 0.41 8.12 -2.39 -0.02 0.39 16 5 O -0.58 -31.09 12.14 -148.98 -1.81 -32.90 16 6 C -0.56 -30.73 7.52 25.60 0.19 -30.54 16 7 H 0.06 3.32 6.45 -2.91 -0.02 3.31 16 8 C 0.02 1.07 5.40 84.65 0.46 1.53 16 9 N -0.91 -55.69 12.84 21.45 0.28 -55.42 16 10 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 C -0.10 -3.70 5.18 31.67 0.16 -3.54 16 15 C -0.12 -3.21 6.91 31.89 0.22 -2.99 16 16 C -0.12 -3.48 6.83 31.67 0.22 -3.26 16 17 C -0.11 -3.92 5.88 31.32 0.18 -3.74 16 18 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 19 H 0.05 1.80 6.54 -2.39 -0.02 1.78 16 20 H 0.05 1.64 6.92 -2.39 -0.02 1.62 16 21 H 0.35 16.75 7.46 -74.05 -0.55 16.20 16 22 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 23 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 24 H 0.04 1.66 7.84 -2.39 -0.02 1.65 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.56 7.42 -2.39 -0.02 1.54 16 30 H 0.07 2.15 7.67 -2.39 -0.02 2.13 16 Total: -1.00 -63.73 238.70 3.06 -60.67 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.56 Total: 18.97 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 2.01 Total: -37.38 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.28 Total: -55.42 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.81 Total: -32.90 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -63.73 3.06 -60.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306523855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.519 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds