Wall clock time and date at job start Mon Mar 30 2020 02:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47137 * 2 1 4 4 C 1.50700 * 109.47132 * 239.99824 * 2 1 3 5 5 H 1.08000 * 119.99613 * 240.00654 * 4 2 1 6 6 C 1.37871 * 119.99801 * 60.27446 * 4 2 1 7 7 N 1.31515 * 120.00393 * 359.72966 * 6 4 2 8 8 Si 1.86800 * 119.99892 * 179.72318 * 6 4 2 9 9 H 1.48497 * 109.47294 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46995 * 120.00337 * 8 6 4 11 11 H 1.48500 * 109.47471 * 240.00048 * 8 6 4 12 12 C 1.53005 * 109.47084 * 119.99783 * 2 1 3 13 13 H 1.08995 * 115.54778 * 78.98914 * 12 2 1 14 14 C 1.53000 * 117.49842 * 293.32304 * 12 2 1 15 15 C 1.52997 * 117.49830 * 224.70083 * 12 2 1 16 16 C 1.53000 * 117.49772 * 214.97533 * 15 12 2 17 17 C 1.53002 * 117.49877 * 0.02562 * 15 12 2 18 18 H 1.09000 * 109.47378 * 174.07535 * 1 2 3 19 19 H 1.09006 * 109.46987 * 294.07503 * 1 2 3 20 20 H 1.09001 * 109.47248 * 54.06985 * 1 2 3 21 21 H 0.96702 * 113.99656 * 206.16560 * 3 2 1 22 22 H 0.97003 * 120.00065 * 180.02562 * 7 6 4 23 23 H 1.08997 * 117.50052 * 0.02562 * 14 12 2 24 24 H 1.09003 * 117.49747 * 144.99636 * 14 12 2 25 25 H 1.09008 * 109.46993 * 60.00352 * 16 15 12 26 26 H 1.08992 * 109.47182 * 179.97438 * 16 15 12 27 27 H 1.08994 * 109.47573 * 300.00758 * 16 15 12 28 28 H 1.08992 * 109.47449 * 60.03995 * 17 15 12 29 29 H 1.09002 * 109.46709 * 180.02562 * 17 15 12 30 30 H 1.08996 * 109.46733 * 300.04018 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.7040 -0.2361 -2.4826 7 7 0.9479 0.8332 -2.6034 8 14 2.3330 -1.1122 -4.0078 9 1 3.1565 -2.2800 -3.6037 10 1 1.1813 -1.5772 -4.8220 11 1 3.1607 -0.1763 -4.8104 12 6 2.0400 -0.7212 1.2493 13 1 2.0196 -1.8101 1.2047 14 6 1.7689 -0.0645 2.6043 15 6 3.1850 -0.0667 2.0249 16 6 4.2142 -0.9908 2.6788 17 6 3.7319 1.2592 1.4922 18 1 -0.3634 -1.0222 -0.1061 19 1 -0.3633 0.4192 0.9383 20 1 -0.3634 0.6030 -0.8321 21 1 2.8850 1.4538 -0.3896 22 1 0.7166 1.1667 -3.4844 23 1 1.2269 0.8812 2.6058 24 1 1.5702 -0.7213 3.4512 25 1 4.6958 -1.5983 1.9124 26 1 4.9660 -0.3916 3.1924 27 1 3.7145 -1.6410 3.3968 28 1 2.9339 2.0015 1.4769 29 1 4.5378 1.6058 2.1391 30 1 4.1134 1.1149 0.4815 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306589391.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:35 Heat of formation + Delta-G solvation = -21.682738 kcal Electronic energy + Delta-G solvation = -12018.295198 eV Core-core repulsion = 10007.824526 eV Total energy + Delta-G solvation = -2010.470673 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.54931 -34.62398 -32.19975 -30.14468 -27.50320 -26.64109 -25.23409 -22.29923 -19.07156 -18.28632 -16.86993 -14.88090 -14.50149 -14.01038 -13.53388 -13.21687 -12.45550 -12.30340 -11.81890 -11.42960 -11.26086 -11.06131 -10.96387 -10.87297 -10.61903 -10.46443 -10.25064 -9.91126 -9.17402 -8.85353 -8.55778 -8.26205 -7.79597 -5.99034 -4.17422 3.25552 3.34560 3.38426 4.37010 4.61671 5.23013 5.50354 5.59638 5.82092 5.84693 6.12489 6.20692 6.27564 6.41709 6.45647 6.66853 6.77537 6.80918 6.90945 7.03341 7.16428 7.23577 7.30003 7.72588 7.83743 8.10666 8.29449 8.87620 9.45750 9.62239 11.00127 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.049653 B = 0.014515 C = 0.013362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.775174 B = 1928.524150 C = 2094.942739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.274 3.726 3 O -0.569 6.569 4 C -0.554 4.554 5 H 0.056 0.944 6 C 0.075 3.925 7 N -0.862 5.862 8 Si 0.888 3.112 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.136 4.136 13 H 0.088 0.912 14 C -0.182 4.182 15 C -0.129 4.129 16 C -0.110 4.110 17 C -0.108 4.108 18 H 0.035 0.965 19 H 0.013 0.987 20 H 0.083 0.917 21 H 0.361 0.639 22 H 0.259 0.741 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.023 0.977 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 -1.299 5.742 6.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.235 3.765 3 O -0.378 6.378 4 C -0.592 4.592 5 H 0.075 0.925 6 C -0.130 4.130 7 N -0.499 5.499 8 Si 0.716 3.284 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.155 4.155 13 H 0.106 0.894 14 C -0.219 4.219 15 C -0.129 4.129 16 C -0.168 4.168 17 C -0.164 4.164 18 H 0.054 0.946 19 H 0.032 0.968 20 H 0.102 0.898 21 H 0.210 0.790 22 H 0.069 0.931 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.042 0.958 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.760 -1.071 5.895 6.596 hybrid contribution 0.797 -0.807 -1.122 1.595 sum 3.557 -1.878 4.773 6.242 Atomic orbital electron populations 1.21640 0.96609 0.99773 0.99841 1.18093 0.90711 0.79592 0.88099 1.86429 1.38672 1.30518 1.82165 1.21656 1.33045 1.13701 0.90793 0.92540 1.25033 0.94385 0.94636 0.98927 1.70037 1.34999 1.21762 1.23058 0.86618 0.78754 0.79845 0.83228 1.19773 1.20965 1.20956 1.23384 1.00183 0.98335 0.93550 0.89417 1.23100 0.98732 1.02642 0.97383 1.21390 0.89277 0.98230 1.03995 1.21322 0.97843 0.98266 0.99330 1.21699 0.99979 0.95847 0.98862 0.94634 0.96813 0.89827 0.78955 0.93082 0.89280 0.90905 0.92766 0.93132 0.93467 0.89331 0.95770 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 8.50 37.16 0.32 -2.72 16 2 C 0.27 6.82 0.82 -91.77 -0.07 6.75 16 3 O -0.57 -14.14 8.82 -35.23 -0.31 -14.45 16 4 C -0.55 -14.90 7.94 -34.44 -0.27 -15.17 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 2.03 5.25 -17.82 -0.09 1.93 16 7 N -0.86 -24.21 10.94 55.43 0.61 -23.60 16 8 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.14 -2.95 4.71 -90.62 -0.43 -3.37 16 13 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 14 C -0.18 -3.48 8.91 -26.73 -0.24 -3.72 16 15 C -0.13 -2.44 2.70 -154.51 -0.42 -2.86 16 16 C -0.11 -1.77 9.85 37.16 0.37 -1.41 16 17 C -0.11 -1.98 7.78 37.16 0.29 -1.70 16 18 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 19 H 0.01 0.30 7.59 -51.93 -0.39 -0.09 16 20 H 0.08 2.29 6.26 -51.93 -0.33 1.97 16 21 H 0.36 8.66 5.80 45.56 0.26 8.93 16 22 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 23 H 0.09 1.79 7.92 -51.93 -0.41 1.37 16 24 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 25 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 26 H 0.05 0.72 7.92 -51.93 -0.41 0.31 16 27 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 28 H 0.09 1.75 5.96 -51.93 -0.31 1.44 16 29 H 0.02 0.39 7.92 -51.93 -0.41 -0.03 16 30 H 0.06 1.10 6.30 -51.93 -0.33 0.78 16 LS Contribution 239.18 15.07 3.60 3.60 Total: -1.00 -27.79 239.18 -5.64 -33.42 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -3.96 Total: 7.45 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -0.55 Total: -22.26 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.61 Total: -23.60 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.31 Total: -14.45 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.79 -5.64 -33.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306589391.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.740 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds