Wall clock time and date at job start Mon Mar 30 2020 02:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47137 * 2 1 4 4 C 1.50700 * 109.47132 * 239.99824 * 2 1 3 5 5 H 1.08000 * 119.99613 * 240.00654 * 4 2 1 6 6 C 1.37871 * 119.99801 * 60.27446 * 4 2 1 7 7 N 1.31515 * 120.00393 * 359.72966 * 6 4 2 8 8 Si 1.86800 * 119.99892 * 179.72318 * 6 4 2 9 9 H 1.48497 * 109.47294 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46995 * 120.00337 * 8 6 4 11 11 H 1.48500 * 109.47471 * 240.00048 * 8 6 4 12 12 C 1.53005 * 109.47084 * 119.99783 * 2 1 3 13 13 H 1.08995 * 115.54778 * 78.98914 * 12 2 1 14 14 C 1.53000 * 117.49842 * 293.32304 * 12 2 1 15 15 C 1.52997 * 117.49830 * 224.70083 * 12 2 1 16 16 C 1.53000 * 117.49772 * 214.97533 * 15 12 2 17 17 C 1.53002 * 117.49877 * 0.02562 * 15 12 2 18 18 H 1.09000 * 109.47378 * 174.07535 * 1 2 3 19 19 H 1.09006 * 109.46987 * 294.07503 * 1 2 3 20 20 H 1.09001 * 109.47248 * 54.06985 * 1 2 3 21 21 H 0.96702 * 113.99656 * 206.16560 * 3 2 1 22 22 H 0.97003 * 120.00065 * 180.02562 * 7 6 4 23 23 H 1.08997 * 117.50052 * 0.02562 * 14 12 2 24 24 H 1.09003 * 117.49747 * 144.99636 * 14 12 2 25 25 H 1.09008 * 109.46993 * 60.00352 * 16 15 12 26 26 H 1.08992 * 109.47182 * 179.97438 * 16 15 12 27 27 H 1.08994 * 109.47573 * 300.00758 * 16 15 12 28 28 H 1.08992 * 109.47449 * 60.03995 * 17 15 12 29 29 H 1.09002 * 109.46709 * 180.02562 * 17 15 12 30 30 H 1.08996 * 109.46733 * 300.04018 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.7040 -0.2361 -2.4826 7 7 0.9479 0.8332 -2.6034 8 14 2.3330 -1.1122 -4.0078 9 1 3.1565 -2.2800 -3.6037 10 1 1.1813 -1.5772 -4.8220 11 1 3.1607 -0.1763 -4.8104 12 6 2.0400 -0.7212 1.2493 13 1 2.0196 -1.8101 1.2047 14 6 1.7689 -0.0645 2.6043 15 6 3.1850 -0.0667 2.0249 16 6 4.2142 -0.9908 2.6788 17 6 3.7319 1.2592 1.4922 18 1 -0.3634 -1.0222 -0.1061 19 1 -0.3633 0.4192 0.9383 20 1 -0.3634 0.6030 -0.8321 21 1 2.8850 1.4538 -0.3896 22 1 0.7166 1.1667 -3.4844 23 1 1.2269 0.8812 2.6058 24 1 1.5702 -0.7213 3.4512 25 1 4.6958 -1.5983 1.9124 26 1 4.9660 -0.3916 3.1924 27 1 3.7145 -1.6410 3.3968 28 1 2.9339 2.0015 1.4769 29 1 4.5378 1.6058 2.1391 30 1 4.1134 1.1149 0.4815 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306589391.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:35 Heat of formation + Delta-G solvation = -38.309260 kcal Electronic energy + Delta-G solvation = -12019.016178 eV Core-core repulsion = 10007.824526 eV Total energy + Delta-G solvation = -2011.191653 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.23014 -36.43242 -34.22838 -31.97141 -29.10157 -28.06879 -27.30480 -24.09756 -20.82427 -19.91186 -18.84401 -16.86281 -16.23186 -15.81739 -15.18835 -14.74713 -14.13396 -13.79639 -13.69156 -13.10861 -13.00621 -12.82542 -12.78783 -12.52517 -12.51439 -12.20223 -12.00184 -11.69875 -10.96769 -10.65923 -10.43250 -10.05444 -9.61912 -8.04825 -6.30104 1.39158 1.42711 1.52950 2.40891 3.04458 3.17417 4.03355 4.12878 4.18342 4.30654 4.44426 4.84444 4.89492 4.92952 5.01675 5.10004 5.14889 5.20611 5.28446 5.33798 5.40380 5.48176 5.63195 5.74853 5.88986 6.09619 6.25423 6.80245 7.40024 7.63817 8.93101 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.049653 B = 0.014515 C = 0.013362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.775174 B = 1928.524150 C = 2094.942739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.267 3.733 3 O -0.574 6.574 4 C -0.567 4.567 5 H 0.049 0.951 6 C 0.031 3.969 7 N -0.890 5.890 8 Si 0.950 3.050 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.279 1.279 12 C -0.163 4.163 13 H 0.083 0.917 14 C -0.168 4.168 15 C -0.121 4.121 16 C -0.107 4.107 17 C -0.104 4.104 18 H 0.034 0.966 19 H 0.025 0.975 20 H 0.055 0.945 21 H 0.362 0.638 22 H 0.259 0.741 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -1.867 6.584 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.227 3.773 3 O -0.383 6.383 4 C -0.605 4.605 5 H 0.067 0.933 6 C -0.171 4.171 7 N -0.527 5.527 8 Si 0.776 3.224 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.205 1.205 12 C -0.181 4.181 13 H 0.101 0.899 14 C -0.205 4.205 15 C -0.121 4.121 16 C -0.164 4.164 17 C -0.160 4.160 18 H 0.053 0.947 19 H 0.044 0.956 20 H 0.074 0.926 21 H 0.211 0.789 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.116 0.884 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.839 -1.643 6.745 7.933 hybrid contribution 0.445 -0.608 -1.359 1.554 sum 4.284 -2.251 5.386 7.241 Atomic orbital electron populations 1.21561 0.97383 0.99190 0.99217 1.18122 0.90336 0.79630 0.89176 1.86428 1.38890 1.30760 1.82208 1.21914 1.32925 1.13595 0.92062 0.93272 1.25713 0.94537 0.95243 1.01584 1.70159 1.35972 1.22976 1.23609 0.85643 0.78140 0.78804 0.79781 1.19433 1.20848 1.20493 1.23115 1.03715 0.97838 0.93478 0.89866 1.23105 0.98822 1.02047 0.96495 1.21607 0.89720 0.98328 1.02433 1.21328 0.97508 0.98111 0.99485 1.21590 1.00237 0.95374 0.98843 0.94659 0.95589 0.92609 0.78868 0.93117 0.90448 0.88356 0.93045 0.90969 0.92084 0.91039 0.92954 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.50 71.98 0.61 -5.25 16 2 C 0.27 13.28 0.82 -11.54 -0.01 13.27 16 3 O -0.57 -28.68 8.82 -148.98 -1.31 -30.00 16 4 C -0.57 -30.60 7.94 25.60 0.20 -30.39 16 5 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 6 C 0.03 1.70 5.25 84.65 0.44 2.15 16 7 N -0.89 -50.49 10.94 21.44 0.23 -50.26 16 8 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 C -0.16 -6.90 4.71 -10.79 -0.05 -6.95 16 13 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 14 C -0.17 -6.08 8.91 30.59 0.27 -5.80 16 15 C -0.12 -4.31 2.70 -52.18 -0.14 -4.45 16 16 C -0.11 -3.08 9.85 71.98 0.71 -2.37 16 17 C -0.10 -3.66 7.78 71.98 0.56 -3.10 16 18 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 19 H 0.03 1.19 7.59 -2.38 -0.02 1.17 16 20 H 0.05 3.11 6.26 -2.39 -0.01 3.10 16 21 H 0.36 17.56 5.80 -74.06 -0.43 17.13 16 22 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 23 H 0.08 2.99 7.92 -2.39 -0.02 2.97 16 24 H 0.10 3.04 8.05 -2.39 -0.02 3.03 16 25 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.07 1.77 7.92 -2.39 -0.02 1.75 16 27 H 0.06 1.58 7.90 -2.39 -0.02 1.56 16 28 H 0.07 2.76 5.96 -2.39 -0.01 2.75 16 29 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 30 H 0.05 1.71 6.30 -2.39 -0.02 1.69 16 Total: -1.00 -57.95 239.18 4.23 -53.72 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.68 Total: 24.58 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 2.60 Total: -42.90 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.23 Total: -50.26 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.31 Total: -30.00 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -57.95 4.23 -53.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306589391.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.413 kcal (2) G-P(sol) polarization free energy of solvation -57.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds