Wall clock time and date at job start Mon Mar 30 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47368 * 2 1 4 4 C 1.50710 * 109.47084 * 239.99929 * 2 1 3 5 5 H 1.07995 * 119.99896 * 240.00525 * 4 2 1 6 6 C 1.37878 * 119.99767 * 60.00276 * 4 2 1 7 7 N 1.31510 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99674 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47544 * 59.99613 * 8 6 4 10 10 H 1.48499 * 109.47143 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47038 * 299.99740 * 8 6 4 12 12 C 1.53001 * 109.47075 * 120.00260 * 2 1 3 13 13 H 1.08997 * 115.54989 * 207.47584 * 12 2 1 14 14 C 1.53003 * 117.49832 * 353.14262 * 12 2 1 15 15 C 1.52999 * 117.49961 * 61.80051 * 12 2 1 16 16 C 1.53003 * 117.49924 * 0.02562 * 15 12 2 17 17 C 1.52998 * 117.49627 * 144.99930 * 15 12 2 18 18 H 1.09008 * 109.47447 * 52.83590 * 1 2 3 19 19 H 1.09003 * 109.47728 * 172.83729 * 1 2 3 20 20 H 1.09001 * 109.47286 * 292.83574 * 1 2 3 21 21 H 0.96702 * 114.00145 * 180.02562 * 3 2 1 22 22 H 0.97001 * 119.99804 * 179.97438 * 7 6 4 23 23 H 1.08997 * 117.49952 * 214.98330 * 14 12 2 24 24 H 1.08999 * 117.49431 * 359.97438 * 14 12 2 25 25 H 1.08996 * 109.47389 * 44.32475 * 16 15 12 26 26 H 1.09000 * 109.46923 * 164.32339 * 16 15 12 27 27 H 1.08998 * 109.46396 * 284.32495 * 16 15 12 28 28 H 1.08996 * 109.47465 * 60.00171 * 17 15 12 29 29 H 1.08999 * 109.47342 * 180.02562 * 17 15 12 30 30 H 1.09005 * 109.47505 * 299.99954 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0078 10 1 1.8259 -0.4206 -5.2205 11 1 3.8063 -1.1210 -4.0081 12 6 2.0399 -0.7213 1.2492 13 1 3.0192 -0.4046 1.6081 14 6 1.0050 -1.1386 2.2960 15 6 1.6708 -2.1970 1.4131 16 6 0.8204 -2.8387 0.3149 17 6 2.7046 -3.1153 2.0681 18 1 -0.3634 0.6208 -0.8190 19 1 -0.3635 -1.0196 -0.1281 20 1 -0.3634 0.3988 0.9471 21 1 2.9703 1.4235 -0.0004 22 1 0.7088 1.1613 -3.4844 23 1 1.3035 -1.0968 3.3435 24 1 -0.0391 -0.8989 2.0948 25 1 1.2025 -2.5406 -0.6614 26 1 0.8664 -3.9238 0.4071 27 1 -0.2135 -2.5088 0.4167 28 1 2.9207 -2.7589 3.0752 29 1 2.3094 -4.1298 2.1183 30 1 3.6204 -3.1114 1.4770 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306589392.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:38 Heat of formation + Delta-G solvation = -25.938124 kcal Electronic energy + Delta-G solvation = -12069.607931 eV Core-core repulsion = 10058.952731 eV Total energy + Delta-G solvation = -2010.655200 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.58947 -34.83598 -32.18819 -29.51635 -28.05332 -26.31488 -25.37777 -22.53161 -18.97478 -17.89760 -16.85118 -15.12618 -14.61406 -14.01606 -13.63798 -12.97576 -12.48001 -12.35060 -11.77981 -11.62202 -11.33010 -10.97249 -10.84936 -10.77117 -10.50991 -10.22477 -10.08573 -9.82613 -9.20433 -9.10836 -8.45401 -8.23388 -7.98163 -5.92083 -4.08343 3.30309 3.36124 3.38015 4.39037 4.63560 5.27770 5.47393 5.57851 5.80431 5.84442 6.21490 6.24343 6.35808 6.36240 6.43503 6.62001 6.69869 6.79247 6.84685 6.99455 7.16333 7.28139 7.48901 7.71143 7.85265 8.12393 8.36221 8.89841 9.45074 9.66692 11.07591 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.042418 B = 0.017006 C = 0.014253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.943891 B = 1646.046146 C = 1963.969452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.277 3.723 3 O -0.563 6.563 4 C -0.548 4.548 5 H 0.060 0.940 6 C 0.078 3.922 7 N -0.857 5.857 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C -0.145 4.145 13 H 0.081 0.919 14 C -0.194 4.194 15 C -0.118 4.118 16 C -0.134 4.134 17 C -0.109 4.109 18 H 0.081 0.919 19 H 0.055 0.945 20 H 0.015 0.985 21 H 0.346 0.654 22 H 0.258 0.742 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 -4.919 5.152 7.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.237 3.763 3 O -0.366 6.366 4 C -0.585 4.585 5 H 0.078 0.922 6 C -0.127 4.127 7 N -0.493 5.493 8 Si 0.711 3.289 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.164 4.164 13 H 0.100 0.900 14 C -0.231 4.231 15 C -0.119 4.119 16 C -0.190 4.190 17 C -0.166 4.166 18 H 0.100 0.900 19 H 0.074 0.926 20 H 0.033 0.967 21 H 0.190 0.810 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.125 0.875 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.433 -4.664 5.022 6.867 hybrid contribution 0.993 -0.628 -0.742 1.389 sum 1.425 -5.292 4.280 6.954 Atomic orbital electron populations 1.21966 0.96298 1.01226 0.99611 1.18206 0.91205 0.78950 0.87889 1.86510 1.23500 1.29581 1.97018 1.21492 1.33266 1.13051 0.90724 0.92160 1.25013 0.94447 0.94482 0.98745 1.70022 1.34723 1.21595 1.23002 0.86830 0.79353 0.79953 0.82813 1.20167 1.21342 1.20271 1.23436 0.97559 0.96300 0.99078 0.90037 1.23407 0.99416 1.05258 0.94985 1.21285 1.00291 0.90715 0.99559 1.21929 0.98670 0.97147 1.01264 1.21327 0.98088 0.98215 0.98995 0.90005 0.92618 0.96658 0.81042 0.93146 0.90908 0.88627 0.87520 0.94885 0.92893 0.93542 0.93063 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 7.10 37.15 0.26 -3.04 16 2 C 0.28 6.86 0.74 -91.77 -0.07 6.79 16 3 O -0.56 -14.71 12.37 -35.23 -0.44 -15.14 16 4 C -0.55 -14.37 5.69 -34.44 -0.20 -14.57 16 5 H 0.06 1.57 6.70 -52.49 -0.35 1.22 16 6 C 0.08 2.12 5.24 -17.82 -0.09 2.03 16 7 N -0.86 -24.42 10.96 55.43 0.61 -23.81 16 8 Si 0.88 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.15 -3.10 5.16 -90.62 -0.47 -3.57 16 13 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 14 C -0.19 -3.69 8.90 -26.69 -0.24 -3.93 16 15 C -0.12 -2.27 2.50 -154.47 -0.39 -2.65 16 16 C -0.13 -2.63 8.10 37.16 0.30 -2.33 16 17 C -0.11 -1.76 9.82 37.16 0.36 -1.39 16 18 H 0.08 2.25 6.30 -51.92 -0.33 1.92 16 19 H 0.06 1.30 4.52 -51.93 -0.23 1.06 16 20 H 0.01 0.34 6.54 -51.93 -0.34 0.00 16 21 H 0.35 8.01 9.04 45.56 0.41 8.42 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 24 H 0.10 1.86 5.68 -51.93 -0.30 1.56 16 25 H 0.11 2.40 4.51 -51.93 -0.23 2.16 16 26 H 0.03 0.56 7.75 -51.93 -0.40 0.16 16 27 H 0.05 1.03 5.87 -51.93 -0.30 0.73 16 28 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 29 H 0.05 0.74 7.84 -51.93 -0.41 0.34 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 232.75 15.07 3.51 3.51 Total: -1.00 -28.55 232.75 -5.15 -33.70 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -3.29 Total: 8.66 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -0.52 Total: -22.66 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.61 Total: -23.81 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.44 Total: -15.14 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.55 -5.15 -33.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306589392.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.761 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds