Wall clock time and date at job start Mon Mar 30 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47368 * 2 1 4 4 C 1.50710 * 109.47084 * 239.99929 * 2 1 3 5 5 H 1.07995 * 119.99896 * 240.00525 * 4 2 1 6 6 C 1.37878 * 119.99767 * 60.00276 * 4 2 1 7 7 N 1.31510 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99674 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47544 * 59.99613 * 8 6 4 10 10 H 1.48499 * 109.47143 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47038 * 299.99740 * 8 6 4 12 12 C 1.53001 * 109.47075 * 120.00260 * 2 1 3 13 13 H 1.08997 * 115.54989 * 207.47584 * 12 2 1 14 14 C 1.53003 * 117.49832 * 353.14262 * 12 2 1 15 15 C 1.52999 * 117.49961 * 61.80051 * 12 2 1 16 16 C 1.53003 * 117.49924 * 0.02562 * 15 12 2 17 17 C 1.52998 * 117.49627 * 144.99930 * 15 12 2 18 18 H 1.09008 * 109.47447 * 52.83590 * 1 2 3 19 19 H 1.09003 * 109.47728 * 172.83729 * 1 2 3 20 20 H 1.09001 * 109.47286 * 292.83574 * 1 2 3 21 21 H 0.96702 * 114.00145 * 180.02562 * 3 2 1 22 22 H 0.97001 * 119.99804 * 179.97438 * 7 6 4 23 23 H 1.08997 * 117.49952 * 214.98330 * 14 12 2 24 24 H 1.08999 * 117.49431 * 359.97438 * 14 12 2 25 25 H 1.08996 * 109.47389 * 44.32475 * 16 15 12 26 26 H 1.09000 * 109.46923 * 164.32339 * 16 15 12 27 27 H 1.08998 * 109.46396 * 284.32495 * 16 15 12 28 28 H 1.08996 * 109.47465 * 60.00171 * 17 15 12 29 29 H 1.08999 * 109.47342 * 180.02562 * 17 15 12 30 30 H 1.09005 * 109.47505 * 299.99954 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0078 10 1 1.8259 -0.4206 -5.2205 11 1 3.8063 -1.1210 -4.0081 12 6 2.0399 -0.7213 1.2492 13 1 3.0192 -0.4046 1.6081 14 6 1.0050 -1.1386 2.2960 15 6 1.6708 -2.1970 1.4131 16 6 0.8204 -2.8387 0.3149 17 6 2.7046 -3.1153 2.0681 18 1 -0.3634 0.6208 -0.8190 19 1 -0.3635 -1.0196 -0.1281 20 1 -0.3634 0.3988 0.9471 21 1 2.9703 1.4235 -0.0004 22 1 0.7088 1.1613 -3.4844 23 1 1.3035 -1.0968 3.3435 24 1 -0.0391 -0.8989 2.0948 25 1 1.2025 -2.5406 -0.6614 26 1 0.8664 -3.9238 0.4071 27 1 -0.2135 -2.5088 0.4167 28 1 2.9207 -2.7589 3.0752 29 1 2.3094 -4.1298 2.1183 30 1 3.6204 -3.1114 1.4770 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306589392.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:38 Heat of formation + Delta-G solvation = -44.724569 kcal Electronic energy + Delta-G solvation = -12070.422572 eV Core-core repulsion = 10058.952731 eV Total energy + Delta-G solvation = -2011.469842 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25860 -36.69756 -34.24537 -31.28504 -29.68878 -27.78956 -27.38668 -24.32320 -20.68688 -19.52814 -18.87817 -16.87880 -16.63672 -15.66400 -15.41290 -14.54466 -14.15140 -13.93986 -13.45836 -13.33807 -13.04895 -12.85014 -12.64926 -12.42268 -12.29341 -12.07478 -11.93169 -11.53577 -10.99286 -10.74502 -10.49771 -9.91636 -9.90467 -7.96560 -6.17798 1.43657 1.44468 1.51263 2.44450 3.05723 3.24498 3.96786 4.09110 4.26645 4.35630 4.52451 4.70359 4.87213 4.92748 4.99040 5.01430 5.14934 5.16628 5.30951 5.36941 5.46911 5.53621 5.67181 5.82121 5.90107 6.13743 6.34142 6.86190 7.44830 7.69237 9.02007 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.042418 B = 0.017006 C = 0.014253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.943891 B = 1646.046146 C = 1963.969452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.266 3.734 3 O -0.584 6.584 4 C -0.545 4.545 5 H 0.059 0.941 6 C 0.030 3.970 7 N -0.892 5.892 8 Si 0.942 3.058 9 H -0.269 1.269 10 H -0.291 1.291 11 H -0.273 1.273 12 C -0.169 4.169 13 H 0.086 0.914 14 C -0.181 4.181 15 C -0.112 4.112 16 C -0.134 4.134 17 C -0.106 4.106 18 H 0.047 0.953 19 H 0.064 0.936 20 H 0.025 0.975 21 H 0.355 0.645 22 H 0.255 0.745 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -6.512 6.119 9.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.227 3.773 3 O -0.389 6.389 4 C -0.582 4.582 5 H 0.077 0.923 6 C -0.172 4.172 7 N -0.530 5.530 8 Si 0.768 3.232 9 H -0.194 1.194 10 H -0.217 1.217 11 H -0.198 1.198 12 C -0.188 4.188 13 H 0.104 0.896 14 C -0.218 4.218 15 C -0.113 4.113 16 C -0.190 4.190 17 C -0.163 4.163 18 H 0.066 0.934 19 H 0.083 0.917 20 H 0.043 0.957 21 H 0.200 0.800 22 H 0.064 0.936 23 H 0.117 0.883 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.043 -6.272 5.996 8.740 hybrid contribution 0.793 -0.133 -1.004 1.286 sum 1.836 -6.405 4.992 8.326 Atomic orbital electron populations 1.21893 0.96723 1.01066 0.98686 1.18309 0.91061 0.78597 0.89306 1.86466 1.24449 1.30737 1.97199 1.21734 1.32375 1.12656 0.91476 0.92255 1.25706 0.94801 0.95145 1.01534 1.70178 1.36364 1.23248 1.23208 0.85888 0.78841 0.79070 0.79415 1.19360 1.21674 1.19826 1.23215 0.98559 0.98231 0.98785 0.89551 1.23439 0.98354 1.04114 0.95850 1.21456 1.00504 0.90047 0.99248 1.21844 0.98325 0.98934 0.99912 1.21334 0.96974 0.98517 0.99476 0.93360 0.91736 0.95656 0.80050 0.93581 0.88319 0.89367 0.90447 0.92278 0.93330 0.91901 0.91148 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 7.10 71.98 0.51 -5.76 16 2 C 0.27 13.15 0.74 -11.54 -0.01 13.14 16 3 O -0.58 -30.76 12.37 -148.98 -1.84 -32.60 16 4 C -0.54 -28.49 5.69 25.60 0.15 -28.34 16 5 H 0.06 3.06 6.70 -2.91 -0.02 3.04 16 6 C 0.03 1.62 5.24 84.66 0.44 2.06 16 7 N -0.89 -51.77 10.96 21.45 0.23 -51.53 16 8 Si 0.94 42.73 29.54 68.60 2.03 44.76 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 C -0.17 -6.97 5.16 -10.79 -0.06 -7.02 16 13 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 14 C -0.18 -6.39 8.90 30.62 0.27 -6.12 16 15 C -0.11 -4.00 2.50 -52.16 -0.13 -4.13 16 16 C -0.13 -4.98 8.10 71.98 0.58 -4.40 16 17 C -0.11 -3.01 9.82 71.98 0.71 -2.30 16 18 H 0.05 2.70 6.30 -2.38 -0.02 2.69 16 19 H 0.06 3.01 4.52 -2.39 -0.01 2.99 16 20 H 0.02 1.15 6.54 -2.39 -0.02 1.13 16 21 H 0.35 16.58 9.04 -74.06 -0.67 15.91 16 22 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 23 H 0.10 2.98 8.05 -2.39 -0.02 2.96 16 24 H 0.09 3.25 5.68 -2.39 -0.01 3.23 16 25 H 0.08 3.39 4.51 -2.39 -0.01 3.38 16 26 H 0.06 1.86 7.75 -2.39 -0.02 1.84 16 27 H 0.05 1.81 5.87 -2.39 -0.01 1.80 16 28 H 0.06 1.58 7.90 -2.39 -0.02 1.56 16 29 H 0.07 1.73 7.84 -2.39 -0.02 1.71 16 30 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -59.90 232.75 3.35 -56.54 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.47 Total: 25.70 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 2.47 Total: -42.87 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.23 Total: -51.53 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.84 Total: -32.60 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -59.90 3.35 -56.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306589392.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.820 kcal (2) G-P(sol) polarization free energy of solvation -59.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds