Wall clock time and date at job start Mon Mar 30 2020 01:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99890 * 2 1 4 4 H 1.48504 * 109.46670 * 240.00061 * 3 2 1 5 5 H 1.48502 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47502 * 119.99804 * 3 2 1 7 7 C 1.37877 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99951 * 359.97438 * 7 2 1 10 10 H 1.09000 * 112.90809 * 316.08620 * 9 7 2 11 11 C 1.53780 * 113.61587 * 87.34624 * 9 7 2 12 12 C 1.53778 * 87.08115 * 139.97908 * 11 9 7 13 13 C 1.53783 * 113.61088 * 184.84322 * 9 7 2 14 14 H 1.08997 * 113.69438 * 105.45834 * 13 9 7 15 15 C 1.50704 * 113.61674 * 334.56272 * 13 9 7 16 16 O 1.21281 * 120.00092 * 286.60623 * 15 13 9 17 17 N 1.34775 * 119.99606 * 106.32400 * 15 13 9 18 18 N 1.36602 * 119.99729 * 180.28133 * 17 15 13 19 19 H 0.96997 * 120.00080 * 359.97438 * 1 2 3 20 20 H 1.08996 * 113.61152 * 25.42547 * 11 9 7 21 21 H 1.08999 * 113.68993 * 254.53973 * 11 9 7 22 22 H 1.09005 * 113.60907 * 220.01790 * 12 11 9 23 23 H 1.09002 * 113.69421 * 89.12744 * 12 11 9 24 24 H 0.96996 * 120.00431 * 0.27461 * 17 15 13 25 25 H 1.00900 * 110.99897 * 180.02562 * 18 17 15 26 26 H 1.00898 * 111.00099 * 303.95003 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.4127 -2.5044 0.6984 11 6 0.8859 -3.0009 -1.4053 12 6 1.2391 -4.4125 -0.9079 13 6 2.1590 -3.7345 0.1211 14 1 2.1338 -4.2031 1.1049 15 6 3.5609 -3.5043 -0.3817 16 8 3.7723 -3.4242 -1.5732 17 7 4.5788 -3.3817 0.4931 18 7 5.8487 -3.1673 0.0376 19 1 -0.4850 0.8400 0.0004 20 1 1.5518 -2.6338 -2.1862 21 1 -0.1679 -2.8768 -1.6548 22 1 1.7745 -5.0133 -1.6432 23 1 0.3983 -4.9422 -0.4599 24 1 4.4098 -3.4457 1.4461 25 1 6.5009 -3.0974 0.8043 26 1 6.1276 -3.8897 -0.6092 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306600899.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:00 Heat of formation + Delta-G solvation = 3.387112 kcal Electronic energy + Delta-G solvation = -11471.920297 eV Core-core repulsion = 9358.996391 eV Total energy + Delta-G solvation = -2112.923906 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.58648 -36.75932 -34.76093 -32.21849 -29.11038 -26.56486 -24.83452 -22.46336 -20.71532 -18.90260 -17.00265 -16.71620 -15.65129 -14.93093 -14.55508 -13.99712 -13.43025 -13.16581 -12.18248 -11.72050 -11.39152 -11.08556 -10.71169 -10.59208 -10.35052 -10.03603 -9.65347 -9.15750 -8.78808 -8.58208 -8.29393 -7.64414 -5.96501 -3.97694 3.38241 3.42304 3.43564 3.48514 3.54561 4.51639 5.31586 5.36236 5.58391 5.68040 5.96280 6.04399 6.46803 6.59300 6.66183 7.00032 7.16675 7.37801 7.48514 7.83374 7.85956 8.01951 8.15717 8.44411 9.04118 9.21770 9.66180 11.13481 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.036129 B = 0.017334 C = 0.012893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.823975 B = 1614.956932 C = 2171.175004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.064 3.936 10 H 0.064 0.936 11 C -0.130 4.130 12 C -0.125 4.125 13 C -0.142 4.142 14 H 0.070 0.930 15 C 0.559 3.441 16 O -0.534 6.534 17 N -0.587 5.587 18 N -0.604 5.604 19 H 0.260 0.740 20 H 0.076 0.924 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.398 0.602 25 H 0.347 0.653 26 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 -7.338 3.457 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.045 3.955 10 H 0.082 0.918 11 C -0.169 4.169 12 C -0.163 4.163 13 C -0.165 4.165 14 H 0.088 0.912 15 C 0.347 3.653 16 O -0.409 6.409 17 N -0.334 5.334 18 N -0.229 5.229 19 H 0.070 0.930 20 H 0.094 0.906 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.234 0.766 25 H 0.160 0.840 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.653 -6.483 2.280 8.898 hybrid contribution 0.835 0.027 1.020 1.318 sum 6.487 -6.455 3.300 9.729 Atomic orbital electron populations 1.69944 1.05937 1.26678 1.50511 1.24954 0.94770 0.99072 0.94810 0.86682 0.79594 0.83132 0.78764 1.20151 1.21414 1.20351 1.21112 0.93002 0.90231 1.50390 0.91982 1.19899 0.92723 0.89469 0.93441 0.91759 1.23073 0.99613 0.92940 1.01229 1.22741 0.97730 0.98177 0.97656 1.22657 0.91279 1.04223 0.98349 0.91160 1.20050 0.84923 0.74631 0.85702 1.90592 1.84225 1.49883 1.16171 1.44824 1.02400 1.77007 1.09146 1.59837 0.93371 1.51040 1.18606 0.92997 0.90555 0.93526 0.92553 0.90882 0.76579 0.84012 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.21 55.43 0.73 -25.57 15 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 15 3 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 15 4 H -0.28 -7.06 7.11 56.52 0.40 -6.65 15 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.51 -14.31 8.29 -34.44 -0.29 -14.59 15 8 H 0.06 1.78 6.49 -52.49 -0.34 1.44 15 9 C 0.06 1.59 3.43 -90.96 -0.31 1.28 15 10 H 0.06 1.69 8.03 -51.93 -0.42 1.27 15 11 C -0.13 -3.14 7.22 -25.92 -0.19 -3.33 15 12 C -0.13 -2.49 7.43 -25.92 -0.19 -2.68 15 13 C -0.14 -2.93 4.26 -90.96 -0.39 -3.32 15 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 15 C 0.56 11.94 5.31 -10.98 -0.06 11.88 15 16 O -0.53 -13.32 15.44 5.56 0.09 -13.24 15 17 N -0.59 -10.07 6.46 31.22 0.20 -9.87 15 18 N -0.60 -9.17 10.03 60.35 0.61 -8.57 15 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 20 H 0.08 2.03 7.25 -51.93 -0.38 1.65 15 21 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.06 1.10 7.86 -51.93 -0.41 0.69 15 23 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 24 H 0.40 5.59 8.83 -185.16 -1.63 3.95 15 25 H 0.35 3.75 9.21 -181.36 -1.67 2.08 15 26 H 0.34 4.78 9.00 -181.37 -1.63 3.15 15 LS Contribution 226.82 15.07 3.42 3.42 Total: -1.00 -33.32 226.82 -8.38 -41.70 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.88 Total: 3.81 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.52 Total: -8.97 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 1.54 Total: -44.01 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -33.32 -8.38 -41.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600899.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.084 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds