Wall clock time and date at job start Mon Mar 30 2020 01:58:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86797 * 119.99890 * 2 1
4 4 H 1.48504 * 109.46670 * 240.00061 * 3 2 1
5 5 H 1.48502 * 109.47058 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47502 * 119.99804 * 3 2 1
7 7 C 1.37877 * 119.99878 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99674 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99951 * 359.97438 * 7 2 1
10 10 H 1.09000 * 112.90809 * 316.08620 * 9 7 2
11 11 C 1.53780 * 113.61587 * 87.34624 * 9 7 2
12 12 C 1.53778 * 87.08115 * 139.97908 * 11 9 7
13 13 C 1.53783 * 113.61088 * 184.84322 * 9 7 2
14 14 H 1.08997 * 113.69438 * 105.45834 * 13 9 7
15 15 C 1.50704 * 113.61674 * 334.56272 * 13 9 7
16 16 O 1.21281 * 120.00092 * 286.60623 * 15 13 9
17 17 N 1.34775 * 119.99606 * 106.32400 * 15 13 9
18 18 N 1.36602 * 119.99729 * 180.28133 * 17 15 13
19 19 H 0.96997 * 120.00080 * 359.97438 * 1 2 3
20 20 H 1.08996 * 113.61152 * 25.42547 * 11 9 7
21 21 H 1.08999 * 113.68993 * 254.53973 * 11 9 7
22 22 H 1.09005 * 113.60907 * 220.01790 * 12 11 9
23 23 H 1.09002 * 113.69421 * 89.12744 * 12 11 9
24 24 H 0.96996 * 120.00431 * 0.27461 * 17 15 13
25 25 H 1.00900 * 110.99897 * 180.02562 * 18 17 15
26 26 H 1.00898 * 111.00099 * 303.95003 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1028 1.6963 -1.2126
5 1 1.2841 2.7464 -0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0017
10 1 0.4127 -2.5044 0.6984
11 6 0.8859 -3.0009 -1.4053
12 6 1.2391 -4.4125 -0.9079
13 6 2.1590 -3.7345 0.1211
14 1 2.1338 -4.2031 1.1049
15 6 3.5609 -3.5043 -0.3817
16 8 3.7723 -3.4242 -1.5732
17 7 4.5788 -3.3817 0.4931
18 7 5.8487 -3.1673 0.0376
19 1 -0.4850 0.8400 0.0004
20 1 1.5518 -2.6338 -2.1862
21 1 -0.1679 -2.8768 -1.6548
22 1 1.7745 -5.0133 -1.6432
23 1 0.3983 -4.9422 -0.4599
24 1 4.4098 -3.4457 1.4461
25 1 6.5009 -3.0974 0.8043
26 1 6.1276 -3.8897 -0.6092
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306600899.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:58:00
Heat of formation + Delta-G solvation = 3.387112 kcal
Electronic energy + Delta-G solvation = -11471.920297 eV
Core-core repulsion = 9358.996391 eV
Total energy + Delta-G solvation = -2112.923906 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 184.095 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-39.58648 -36.75932 -34.76093 -32.21849 -29.11038 -26.56486 -24.83452 -22.46336
-20.71532 -18.90260 -17.00265 -16.71620 -15.65129 -14.93093 -14.55508 -13.99712
-13.43025 -13.16581 -12.18248 -11.72050 -11.39152 -11.08556 -10.71169 -10.59208
-10.35052 -10.03603 -9.65347 -9.15750 -8.78808 -8.58208 -8.29393 -7.64414
-5.96501 -3.97694 3.38241 3.42304 3.43564 3.48514 3.54561 4.51639
5.31586 5.36236 5.58391 5.68040 5.96280 6.04399 6.46803 6.59300
6.66183 7.00032 7.16675 7.37801 7.48514 7.83374 7.85956 8.01951
8.15717 8.44411 9.04118 9.21770 9.66180 11.13481
Molecular weight = 184.10amu
Principal moments of inertia in cm(-1)
A = 0.036129 B = 0.017334 C = 0.012893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 774.823975 B = 1614.956932 C = 2171.175004
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.066 3.934
3 Si 0.890 3.110
4 H -0.276 1.276
5 H -0.288 1.288
6 H -0.278 1.278
7 C -0.509 4.509
8 H 0.062 0.938
9 C 0.064 3.936
10 H 0.064 0.936
11 C -0.130 4.130
12 C -0.125 4.125
13 C -0.142 4.142
14 H 0.070 0.930
15 C 0.559 3.441
16 O -0.534 6.534
17 N -0.587 5.587
18 N -0.604 5.604
19 H 0.260 0.740
20 H 0.076 0.924
21 H 0.046 0.954
22 H 0.056 0.944
23 H 0.073 0.927
24 H 0.398 0.602
25 H 0.347 0.653
26 H 0.337 0.663
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.970 -7.338 3.457 10.072
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.136 4.136
3 Si 0.718 3.282
4 H -0.202 1.202
5 H -0.214 1.214
6 H -0.204 1.204
7 C -0.547 4.547
8 H 0.080 0.920
9 C 0.045 3.955
10 H 0.082 0.918
11 C -0.169 4.169
12 C -0.163 4.163
13 C -0.165 4.165
14 H 0.088 0.912
15 C 0.347 3.653
16 O -0.409 6.409
17 N -0.334 5.334
18 N -0.229 5.229
19 H 0.070 0.930
20 H 0.094 0.906
21 H 0.065 0.935
22 H 0.074 0.926
23 H 0.091 0.909
24 H 0.234 0.766
25 H 0.160 0.840
26 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 5.653 -6.483 2.280 8.898
hybrid contribution 0.835 0.027 1.020 1.318
sum 6.487 -6.455 3.300 9.729
Atomic orbital electron populations
1.69944 1.05937 1.26678 1.50511 1.24954 0.94770 0.99072 0.94810
0.86682 0.79594 0.83132 0.78764 1.20151 1.21414 1.20351 1.21112
0.93002 0.90231 1.50390 0.91982 1.19899 0.92723 0.89469 0.93441
0.91759 1.23073 0.99613 0.92940 1.01229 1.22741 0.97730 0.98177
0.97656 1.22657 0.91279 1.04223 0.98349 0.91160 1.20050 0.84923
0.74631 0.85702 1.90592 1.84225 1.49883 1.16171 1.44824 1.02400
1.77007 1.09146 1.59837 0.93371 1.51040 1.18606 0.92997 0.90555
0.93526 0.92553 0.90882 0.76579 0.84012 0.84889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.31 13.21 55.43 0.73 -25.57 15
2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 15
3 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 15
4 H -0.28 -7.06 7.11 56.52 0.40 -6.65 15
5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15
6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15
7 C -0.51 -14.31 8.29 -34.44 -0.29 -14.59 15
8 H 0.06 1.78 6.49 -52.49 -0.34 1.44 15
9 C 0.06 1.59 3.43 -90.96 -0.31 1.28 15
10 H 0.06 1.69 8.03 -51.93 -0.42 1.27 15
11 C -0.13 -3.14 7.22 -25.92 -0.19 -3.33 15
12 C -0.13 -2.49 7.43 -25.92 -0.19 -2.68 15
13 C -0.14 -2.93 4.26 -90.96 -0.39 -3.32 15
14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15
15 C 0.56 11.94 5.31 -10.98 -0.06 11.88 15
16 O -0.53 -13.32 15.44 5.56 0.09 -13.24 15
17 N -0.59 -10.07 6.46 31.22 0.20 -9.87 15
18 N -0.60 -9.17 10.03 60.35 0.61 -8.57 15
19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15
20 H 0.08 2.03 7.25 -51.93 -0.38 1.65 15
21 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15
22 H 0.06 1.10 7.86 -51.93 -0.41 0.69 15
23 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15
24 H 0.40 5.59 8.83 -185.16 -1.63 3.95 15
25 H 0.35 3.75 9.21 -181.36 -1.67 2.08 15
26 H 0.34 4.78 9.00 -181.37 -1.63 3.15 15
LS Contribution 226.82 15.07 3.42 3.42
Total: -1.00 -33.32 226.82 -8.38 -41.70
By element:
Atomic # 1 Polarization: 10.69 SS G_CDS: -6.88 Total: 3.81 kcal
Atomic # 6 Polarization: -7.45 SS G_CDS: -1.52 Total: -8.97 kcal
Atomic # 7 Polarization: -45.55 SS G_CDS: 1.54 Total: -44.01 kcal
Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.24 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 3.42 Total: 3.42 kcal
Total: -33.32 -8.38 -41.70 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306600899.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.084 kcal
(2) G-P(sol) polarization free energy of solvation -33.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.767 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.387 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds