Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00449 * 2 1 4 4 H 1.48502 * 109.46948 * 270.00397 * 3 2 1 5 5 H 1.48505 * 109.47160 * 30.00121 * 3 2 1 6 6 H 1.48494 * 109.47236 * 150.00419 * 3 2 1 7 7 C 1.37888 * 119.99449 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00078 * 359.97438 * 7 2 1 10 10 H 1.09010 * 112.84791 * 36.12702 * 9 7 2 11 11 C 1.53775 * 113.61601 * 264.93220 * 9 7 2 12 12 C 1.53776 * 87.17462 * 219.89401 * 11 9 7 13 13 C 1.53781 * 113.69186 * 167.39272 * 9 7 2 14 14 H 1.08997 * 113.61580 * 254.54731 * 13 9 7 15 15 C 1.50701 * 113.60817 * 25.36056 * 13 9 7 16 16 O 1.21284 * 120.00217 * 87.03768 * 15 13 9 17 17 N 1.34777 * 120.00379 * 267.03019 * 15 13 9 18 18 N 1.36601 * 120.00605 * 180.02562 * 17 15 13 19 19 H 0.97004 * 119.99736 * 359.97438 * 1 2 3 20 20 H 1.09006 * 113.61129 * 334.48279 * 11 9 7 21 21 H 1.08995 * 113.61802 * 105.30133 * 11 9 7 22 22 H 1.09000 * 113.62301 * 140.02011 * 12 11 9 23 23 H 1.09001 * 113.61903 * 270.92551 * 12 11 9 24 24 H 0.97006 * 119.99809 * 0.02562 * 17 15 13 25 25 H 1.00895 * 111.00029 * 180.02562 * 18 17 15 26 26 H 1.00899 * 110.99652 * 303.95814 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.3363 -2.4599 -0.5924 11 6 1.0511 -3.0952 1.4029 12 6 1.3345 -4.4706 0.7760 13 6 2.1318 -3.7215 -0.3085 14 1 1.9875 -4.1221 -1.3119 15 6 3.5847 -3.5210 0.0381 16 8 3.9795 -3.7619 1.1593 17 7 4.4454 -3.0741 -0.8978 18 7 5.7624 -2.8929 -0.5838 19 1 -0.4850 0.8401 0.0004 20 1 1.8063 -2.7796 2.1228 21 1 0.0347 -2.9891 1.7817 22 1 1.9482 -5.1180 1.4023 23 1 0.4428 -4.9694 0.3961 24 1 4.1296 -2.8812 -1.7945 25 1 6.2811 -2.5560 -1.3810 26 1 5.8640 -2.2696 0.2030 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306600910.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = 0.051559 kcal Electronic energy + Delta-G solvation = -11493.123497 eV Core-core repulsion = 9380.054950 eV Total energy + Delta-G solvation = -2113.068546 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.57244 -36.71241 -34.79041 -32.36844 -29.04383 -26.64562 -24.84426 -22.54028 -20.71159 -18.85365 -17.10916 -16.56056 -15.84881 -15.02623 -14.61400 -13.72886 -13.66975 -13.13033 -12.26930 -11.76796 -11.43449 -11.21548 -10.82482 -10.66946 -10.46934 -10.07512 -9.65428 -9.26931 -8.81421 -8.69281 -8.44383 -7.62710 -6.11847 -4.14538 3.20528 3.29608 3.31783 3.44900 3.64026 4.34389 5.17980 5.40291 5.61797 5.66173 5.95665 6.08708 6.48742 6.55625 6.71794 7.02513 7.11209 7.27452 7.44000 7.67841 7.86470 7.90537 8.18280 8.31688 8.87316 9.23422 9.49175 10.97733 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.017810 C = 0.013042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.946006 B = 1571.739418 C = 2146.432825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.058 3.942 10 H 0.072 0.928 11 C -0.135 4.135 12 C -0.124 4.124 13 C -0.144 4.144 14 H 0.075 0.925 15 C 0.562 3.438 16 O -0.546 6.546 17 N -0.582 5.582 18 N -0.604 5.604 19 H 0.262 0.738 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.399 0.601 25 H 0.346 0.654 26 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 -3.470 -3.745 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.039 3.961 10 H 0.090 0.910 11 C -0.174 4.174 12 C -0.162 4.162 13 C -0.167 4.167 14 H 0.094 0.906 15 C 0.350 3.650 16 O -0.421 6.421 17 N -0.328 5.328 18 N -0.229 5.229 19 H 0.072 0.928 20 H 0.089 0.911 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.236 0.764 25 H 0.158 0.842 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.846 -4.301 -2.783 7.052 hybrid contribution 0.308 2.262 -0.740 2.400 sum 5.154 -2.039 -3.523 6.568 Atomic orbital electron populations 1.69935 1.05931 1.26770 1.49787 1.24987 0.94809 0.99063 0.94622 0.86665 0.80026 0.83738 0.77986 1.20693 1.21009 1.20046 1.21084 0.92606 0.90440 1.51074 0.92617 1.19972 0.94105 0.89412 0.92583 0.91035 1.23104 0.99772 0.94000 1.00481 1.22757 0.98327 0.97681 0.97457 1.22724 0.90948 1.03992 0.99002 0.90646 1.20000 0.86416 0.74763 0.83786 1.90581 1.78932 1.51272 1.21347 1.44832 1.03907 1.69289 1.14752 1.60138 0.96395 1.55656 1.10675 0.92808 0.91093 0.93495 0.92009 0.90880 0.76376 0.84182 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 13.08 55.43 0.72 -24.42 15 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 7 C -0.51 -13.63 8.32 -34.44 -0.29 -13.92 15 8 H 0.06 1.46 6.07 -52.49 -0.32 1.14 15 9 C 0.06 1.41 3.53 -90.96 -0.32 1.09 15 10 H 0.07 1.84 7.82 -51.92 -0.41 1.44 15 11 C -0.14 -3.18 7.24 -25.92 -0.19 -3.36 15 12 C -0.12 -2.49 7.45 -25.78 -0.19 -2.69 15 13 C -0.14 -2.97 4.27 -90.82 -0.39 -3.36 15 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 15 C 0.56 12.11 5.52 -10.98 -0.06 12.05 15 16 O -0.55 -13.50 15.64 5.55 0.09 -13.41 15 17 N -0.58 -10.35 5.97 31.22 0.19 -10.16 15 18 N -0.60 -9.47 10.03 60.35 0.61 -8.87 15 19 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 20 H 0.07 1.81 7.65 -51.93 -0.40 1.41 15 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.06 1.25 7.61 -51.93 -0.40 0.85 15 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.40 6.07 8.83 -185.15 -1.63 4.44 15 25 H 0.35 3.96 9.21 -181.37 -1.67 2.29 15 26 H 0.34 5.63 9.00 -181.37 -1.63 4.00 15 LS Contribution 226.27 15.07 3.41 3.41 Total: -1.00 -31.32 226.27 -8.40 -39.72 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.86 Total: 6.28 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.53 Total: -8.44 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 1.52 Total: -43.46 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.32 -8.40 -39.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600910.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.771 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds