Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00449 * 2 1 4 4 H 1.48502 * 109.46948 * 270.00397 * 3 2 1 5 5 H 1.48505 * 109.47160 * 30.00121 * 3 2 1 6 6 H 1.48494 * 109.47236 * 150.00419 * 3 2 1 7 7 C 1.37888 * 119.99449 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00078 * 359.97438 * 7 2 1 10 10 H 1.09010 * 112.84791 * 36.12702 * 9 7 2 11 11 C 1.53775 * 113.61601 * 264.93220 * 9 7 2 12 12 C 1.53776 * 87.17462 * 219.89401 * 11 9 7 13 13 C 1.53781 * 113.69186 * 167.39272 * 9 7 2 14 14 H 1.08997 * 113.61580 * 254.54731 * 13 9 7 15 15 C 1.50701 * 113.60817 * 25.36056 * 13 9 7 16 16 O 1.21284 * 120.00217 * 87.03768 * 15 13 9 17 17 N 1.34777 * 120.00379 * 267.03019 * 15 13 9 18 18 N 1.36601 * 120.00605 * 180.02562 * 17 15 13 19 19 H 0.97004 * 119.99736 * 359.97438 * 1 2 3 20 20 H 1.09006 * 113.61129 * 334.48279 * 11 9 7 21 21 H 1.08995 * 113.61802 * 105.30133 * 11 9 7 22 22 H 1.09000 * 113.62301 * 140.02011 * 12 11 9 23 23 H 1.09001 * 113.61903 * 270.92551 * 12 11 9 24 24 H 0.97006 * 119.99809 * 0.02562 * 17 15 13 25 25 H 1.00895 * 111.00029 * 180.02562 * 18 17 15 26 26 H 1.00899 * 110.99652 * 303.95814 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.3363 -2.4599 -0.5924 11 6 1.0511 -3.0952 1.4029 12 6 1.3345 -4.4706 0.7760 13 6 2.1318 -3.7215 -0.3085 14 1 1.9875 -4.1221 -1.3119 15 6 3.5847 -3.5210 0.0381 16 8 3.9795 -3.7619 1.1593 17 7 4.4454 -3.0741 -0.8978 18 7 5.7624 -2.8929 -0.5838 19 1 -0.4850 0.8401 0.0004 20 1 1.8063 -2.7796 2.1228 21 1 0.0347 -2.9891 1.7817 22 1 1.9482 -5.1180 1.4023 23 1 0.4428 -4.9694 0.3961 24 1 4.1296 -2.8812 -1.7945 25 1 6.2811 -2.5560 -1.3810 26 1 5.8640 -2.2696 0.2030 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306600910.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = -23.010832 kcal Electronic energy + Delta-G solvation = -11494.123557 eV Core-core repulsion = 9380.054950 eV Total energy + Delta-G solvation = -2114.068607 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.24490 -38.36496 -36.40391 -34.40190 -30.53475 -28.61627 -26.51383 -24.42005 -22.37482 -20.48052 -18.98110 -18.06490 -17.57727 -16.77890 -16.36687 -15.42864 -15.35242 -14.80563 -14.07459 -13.63137 -13.29280 -13.07359 -12.62244 -12.33814 -12.19867 -11.85544 -11.53116 -11.07640 -10.65574 -10.51304 -10.43228 -9.02703 -8.17249 -6.24656 1.34813 1.38823 1.46352 1.84518 2.15612 2.38742 3.13220 3.92321 3.96618 4.20198 4.32345 4.49260 4.70982 4.92462 5.07865 5.24785 5.38690 5.58557 5.66704 5.75890 5.94021 6.31974 6.43223 6.79194 6.83576 7.41541 7.71528 8.92386 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.017810 C = 0.013042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.946006 B = 1571.739418 C = 2146.432825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.055 0.945 11 C -0.141 4.141 12 C -0.107 4.107 13 C -0.135 4.135 14 H 0.110 0.890 15 C 0.552 3.448 16 O -0.585 6.585 17 N -0.569 5.569 18 N -0.608 5.608 19 H 0.262 0.738 20 H 0.043 0.957 21 H 0.040 0.960 22 H 0.061 0.939 23 H 0.104 0.896 24 H 0.413 0.587 25 H 0.371 0.629 26 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.570 -3.693 -4.828 8.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C 0.027 3.973 10 H 0.073 0.927 11 C -0.179 4.179 12 C -0.145 4.145 13 C -0.157 4.157 14 H 0.128 0.872 15 C 0.340 3.660 16 O -0.464 6.464 17 N -0.314 5.314 18 N -0.235 5.235 19 H 0.071 0.929 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.122 0.878 24 H 0.253 0.747 25 H 0.187 0.813 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.709 -4.515 -3.932 8.273 hybrid contribution 0.090 2.315 -0.415 2.354 sum 5.799 -2.200 -4.347 7.574 Atomic orbital electron populations 1.70042 1.07210 1.27438 1.51230 1.25708 0.95554 1.02232 0.94692 0.85721 0.78497 0.79956 0.78437 1.19298 1.21251 1.20163 1.21390 0.92772 0.91575 1.50127 0.92669 1.19910 0.94204 0.90202 0.92935 0.92697 1.23000 0.98498 0.96820 0.99585 1.22716 0.99327 0.95832 0.96635 1.22618 0.90147 1.01869 1.01081 0.87221 1.20165 0.87156 0.74919 0.83722 1.90563 1.79648 1.53204 1.22960 1.44648 1.04464 1.67527 1.14750 1.60048 0.95334 1.56165 1.11974 0.92869 0.93835 0.94083 0.92044 0.87798 0.74713 0.81341 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.41 13.08 21.45 0.28 -52.13 15 2 C 0.02 0.94 5.46 84.66 0.46 1.40 15 3 Si 0.95 42.61 29.54 68.60 2.03 44.64 15 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 15 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 7 C -0.52 -27.34 8.32 25.60 0.21 -27.13 15 8 H 0.06 2.84 6.07 -2.91 -0.02 2.83 15 9 C 0.05 2.23 3.53 -11.02 -0.04 2.19 15 10 H 0.05 2.82 7.82 -2.38 -0.02 2.80 15 11 C -0.14 -6.60 7.24 31.12 0.23 -6.38 15 12 C -0.11 -4.11 7.45 31.21 0.23 -3.88 15 13 C -0.13 -5.29 4.27 -10.92 -0.05 -5.34 15 14 H 0.11 3.54 8.14 -2.39 -0.02 3.52 15 15 C 0.55 22.89 5.52 87.66 0.48 23.38 15 16 O -0.58 -28.51 15.64 -3.04 -0.05 -28.56 15 17 N -0.57 -18.91 5.97 -173.53 -1.04 -19.95 15 18 N -0.61 -17.67 10.03 37.02 0.37 -17.30 15 19 H 0.26 14.23 8.31 -92.71 -0.77 13.46 15 20 H 0.04 2.25 7.65 -2.38 -0.02 2.23 15 21 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 22 H 0.06 2.37 7.61 -2.39 -0.02 2.35 15 23 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 24 H 0.41 11.37 8.83 -215.49 -1.90 9.47 15 25 H 0.37 7.42 9.21 -210.56 -1.94 5.48 15 26 H 0.34 10.60 9.00 -210.56 -1.90 8.70 15 Total: -1.00 -66.15 226.27 -1.39 -67.54 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -4.52 Total: 21.50 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 1.53 Total: -15.75 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -0.38 Total: -89.38 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -66.15 -1.39 -67.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306600910.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.532 kcal (2) G-P(sol) polarization free energy of solvation -66.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds