Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 N 1.46503 * 113.73471 * 138.02919 * 4 3 2 6 6 C 1.34771 * 120.00270 * 154.99776 * 5 4 3 7 7 O 1.21690 * 120.00223 * 359.97438 * 6 5 4 8 8 C 1.46377 * 119.99631 * 179.97438 * 6 5 4 9 9 H 1.07995 * 120.00246 * 0.02562 * 8 6 5 10 10 C 1.40057 * 119.99436 * 179.97438 * 8 6 5 11 11 N 1.30665 * 120.00143 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99520 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47368 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46744 * 120.00290 * 12 10 8 15 15 H 1.48498 * 109.47286 * 240.00400 * 12 10 8 16 16 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 17 17 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 18 18 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 19 19 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 20 20 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 21 21 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 22 22 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 23 23 H 0.97008 * 119.99634 * 334.99105 * 5 4 3 24 24 H 0.97003 * 119.99920 * 180.02562 * 11 10 8 25 25 H 1.09005 * 113.65869 * 23.13541 * 16 2 1 26 26 H 1.09002 * 113.92722 * 251.82174 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 7 3.2485 1.8204 -2.1396 6 6 4.4120 1.7926 -2.8192 7 8 5.2742 0.9888 -2.5169 8 6 4.6386 2.7294 -3.9209 9 1 3.8736 3.4430 -4.1889 10 6 5.8479 2.7009 -4.6267 11 7 6.7737 1.8378 -4.3021 12 14 6.1373 3.8968 -6.0323 13 1 4.9436 4.7645 -6.1977 14 1 7.3226 4.7387 -5.7296 15 1 6.3761 3.1383 -7.2864 16 6 2.0019 -0.2232 -1.3646 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 2.4459 1.6803 0.9483 21 1 1.3003 2.1201 -0.3924 22 1 3.9474 0.5117 -0.5975 23 1 2.5613 2.4614 -2.3804 24 1 7.6114 1.8183 -4.7908 25 1 1.3025 0.0447 -2.1566 26 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306604234.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = -5.820338 kcal Electronic energy + Delta-G solvation = -11059.251877 eV Core-core repulsion = 8945.928707 eV Total energy + Delta-G solvation = -2113.323171 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.57059 -36.73568 -32.83873 -32.07488 -29.17470 -26.24010 -25.76042 -23.14883 -20.04108 -19.36251 -17.15081 -15.73423 -15.45487 -15.12132 -14.57759 -13.94668 -13.11181 -12.69168 -12.42262 -12.31903 -12.11175 -11.36054 -11.10590 -11.05357 -10.53087 -10.49901 -10.29634 -10.12064 -8.87774 -8.72308 -7.61787 -7.55505 -6.19887 -4.66146 3.12297 3.20490 3.24846 4.06697 4.20667 4.53141 4.81546 5.04304 5.30020 5.38571 5.50587 5.68035 5.75275 5.86776 5.88573 6.00496 6.23978 6.48266 6.64632 7.24897 7.42094 7.88852 8.07023 8.31318 9.01044 9.50005 10.58288 10.76549 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.096848 B = 0.008984 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.042879 B = 3116.051040 C = 3251.510606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.486 5.486 3 C -0.012 4.012 4 C 0.138 3.862 5 N -0.756 5.756 6 C 0.553 3.447 7 O -0.578 6.578 8 C -0.546 4.546 9 H 0.068 0.932 10 C 0.087 3.913 11 N -0.767 5.767 12 Si 0.908 3.092 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.017 4.017 17 H 0.032 0.968 18 H 0.066 0.934 19 H 0.064 0.936 20 H 0.088 0.912 21 H 0.067 0.933 22 H 0.112 0.888 23 H 0.380 0.620 24 H 0.268 0.732 25 H 0.068 0.932 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 0.798 3.551 10.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.209 5.209 3 C -0.142 4.142 4 C 0.030 3.970 5 N -0.410 5.410 6 C 0.357 3.643 7 O -0.461 6.461 8 C -0.583 4.583 9 H 0.086 0.914 10 C -0.132 4.132 11 N -0.395 5.395 12 Si 0.733 3.267 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.202 1.202 16 C -0.147 4.147 17 H 0.051 0.949 18 H 0.085 0.915 19 H 0.082 0.918 20 H 0.106 0.894 21 H 0.085 0.915 22 H 0.130 0.870 23 H 0.212 0.788 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.412 -0.327 4.269 9.439 hybrid contribution -0.706 1.396 -1.430 2.119 sum -9.118 1.069 2.838 9.609 Atomic orbital electron populations 1.22813 0.90210 1.01955 1.00647 1.68421 1.08410 1.18629 1.25441 1.24420 0.97695 0.91234 1.00840 1.22350 0.97150 0.89625 0.87894 1.46181 1.20340 1.38758 1.35715 1.18283 0.79372 0.84362 0.82241 1.90601 1.43936 1.41957 1.69614 1.20931 1.02121 1.19098 1.16122 0.91396 1.25714 0.95321 0.95012 0.97198 1.70028 1.04637 1.29679 1.35196 0.86316 0.78907 0.80591 0.80927 1.18806 1.20145 1.20159 1.24668 0.98152 1.02055 0.89836 0.94942 0.91500 0.91761 0.89405 0.91472 0.86961 0.78821 0.92115 0.91407 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.06 0.58 0.50 15 2 N -0.49 -7.57 6.56 -245.79 -1.61 -9.18 15 3 C -0.01 -0.19 7.73 -2.77 -0.02 -0.21 15 4 C 0.14 2.71 4.43 -69.33 -0.31 2.40 15 5 N -0.76 -16.85 5.36 -56.12 -0.30 -17.15 15 6 C 0.55 15.73 7.75 -12.99 -0.10 15.63 15 7 O -0.58 -18.78 14.62 5.20 0.08 -18.70 15 8 C -0.55 -15.38 9.54 -35.63 -0.34 -15.72 15 9 H 0.07 1.75 7.85 -52.49 -0.41 1.34 15 10 C 0.09 2.44 5.50 -17.37 -0.10 2.34 15 11 N -0.77 -23.02 11.83 55.55 0.66 -22.37 15 12 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 15 13 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 16 C -0.02 -0.29 7.78 -2.65 -0.02 -0.31 15 17 H 0.03 0.39 7.62 -51.93 -0.40 -0.01 15 18 H 0.07 0.77 8.14 -51.93 -0.42 0.34 15 19 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 20 H 0.09 1.29 8.14 -51.93 -0.42 0.86 15 21 H 0.07 0.94 7.90 -51.93 -0.41 0.53 15 22 H 0.11 2.52 7.46 -51.93 -0.39 2.13 15 23 H 0.38 7.41 8.71 -40.82 -0.36 7.05 15 24 H 0.27 7.27 8.29 -40.82 -0.34 6.93 15 25 H 0.07 1.12 7.62 -51.93 -0.40 0.72 15 26 H 0.09 1.54 8.14 -51.93 -0.42 1.11 15 LS Contribution 229.65 15.07 3.46 3.46 Total: -1.00 -33.13 229.65 -6.23 -39.36 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.18 Total: 4.91 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.31 Total: 4.63 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -1.26 Total: -48.70 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.08 Total: -18.70 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -33.13 -6.23 -39.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306604234.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.541 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds